RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IGF2-ASQ6U949 168 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 CLEC2BQ92478 149 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 TMEM141Q96I45 108 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 DSPP15924 2871 aaKnown RBP6.77□□□□□ -1.33
RTN3-202ENST00000339997 FAM236AA0A1B0GUQ0 79 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 FAM236BA0A1B0GV22 79 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 FAM223BA6NKX1 122 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 K7EIM0 57 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 GDF5OSQ5U4N7 250 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 FAM223AQ8IWN6 122 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 ODF3L1Q8IXM7 274 aa6.77□□□□□ -1.33
RTN3-202ENST00000339997 PROP1O75360 226 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 IGF2BP2-AS1Q96M15 143 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 ANGP03950 147 aaKnown RBP6.76□□□□□ -1.33
RTN3-202ENST00000339997 Q6ZQT7 251 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 DENND4AQ7Z401 1863 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 C2orf70A6NJV1 201 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 IGLV1-44P01699 117 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 SPANXCQ9NY87 97 aa6.76□□□□□ -1.33
RTN3-202ENST00000339997 NOP10Q9NPE3 64 aaKnown RBP6.76□□□□□ -1.33
RTN3-202ENST00000339997 KMT2EQ8IZD2 1858 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 IGHV1-69DA0A0B4J2H0 117 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 IGHV1-69P01742 117 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 MSMBP08118 114 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 MSMPQ1L6U9 139 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 CASC2Q6XLA1 102 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 ZNF503Q96F45 646 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 ETDCA0A1B0GVM5 59 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 CTSGP08311 255 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 KIAA1549LQ6ZVL6 1849 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 SIVA1O15304 175 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 TMEM243Q9BU79 118 aa6.75□□□□□ -1.33
RTN3-202ENST00000339997 ZFP2Q6ZN57 461 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 U3KQE9 123 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 FOXI1Q12951 378 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 C11orf86A6NJI1 115 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 IGHV4-59P01825 116 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 TMEM190Q8WZ59 177 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 NRGNQ92686 78 aa6.74□□□□□ -1.33
RTN3-202ENST00000339997 ODF1Q14990 250 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 I3L2K1 104 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 BRWD1-AS2P59051 145 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 TEN1Q86WV5 123 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 ZNF295-AS1Q8N0V1 137 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 WFDC11Q8NEX6 87 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 RNF183Q96D59 192 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 IGHV7-4-1A0A0J9YVY3 117 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 SHISA9B4DS77 424 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 MT-ATP8P03928 68 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 Q9HAA7 133 aa6.73□□□□□ -1.33
RTN3-202ENST00000339997 NDUFA4O00483 81 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 ZNF80P51504 273 aaPredicted RBP6.72□□□□□ -1.33
RTN3-202ENST00000339997 LINC01620Q4KN68 170 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 LINC00311Q8N616 119 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 TP53TG3Q9ULZ0 132 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 CUBNO60494 3623 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 IGHV7-81A0A0B4J1V7 117 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 ACANP16112 2415 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 TRAV4A0A0B4J268 109 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 G3V4G9 280 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 APOC4P55056 127 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 MRPL53Q96EL3 112 aaKnown RBP6.72□□□□□ -1.33
RTN3-202ENST00000339997 IGKV2D-24A0A075B6R9 120 aa6.72□□□□□ -1.33
RTN3-202ENST00000339997 ASH1LQ9NR48 2969 aaKnown RBP6.72□□□□□ -1.33
RTN3-202ENST00000339997 BUB3O43684 328 aa6.71□□□□□ -1.33
RTN3-202ENST00000339997 C1orf229Q6ZS94 237 aaPredicted RBP6.71□□□□□ -1.33
RTN3-202ENST00000339997 AJUBAQ96IF1 538 aa6.71□□□□□ -1.33
RTN3-202ENST00000339997 IGKV2D-26A0A0A0MRZ7 120 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 DEFB4AO15263 64 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 HIST2H2BDQ6DRA6 164 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 P0DMU3 169 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 FAM231AP0DMU4 169 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 FAM231CP0DMU5 169 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 IGHV4-38-2P0DP08 117 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 SLURP1P55000 103 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 Q8N1Y9 231 aa6.71□□□□□ -1.34
RTN3-202ENST00000339997 IGLV2-8P01709 118 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 TRBV12-3P01733 135 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 NCOR1P1Q9H4R4 102 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 MDFICQ9P1T7 246 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 IGF1P05019 195 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 MRPL55Q7Z7F7 128 aaKnown RBP6.7□□□□□ -1.34
RTN3-202ENST00000339997 C11orf1Q9H5F2 150 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 HIST2H2BCQ6DN03 193 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 ICOSQ9Y6W8 199 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 TICRRQ7Z2Z1 1910 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 TEX49A0A1B0GTD5 131 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 LINC01619G3V211 115 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 ATP5G1P05496 136 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 UNQ9165/PRO28630Q6UXU0 137 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 SND1-IT1Q9HBX3 110 aa6.7□□□□□ -1.34
RTN3-202ENST00000339997 FASNP49327 2511 aaKnown RBP6.69□□□□□ -1.34
RTN3-202ENST00000339997 LINC01548A6NM66 108 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 LECT2O14960 151 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 DEFB112Q30KQ8 113 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 HERVK_113P63121 156 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 SPATA25Q9BR10 227 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 TRAV13-2A0A0B4J235 113 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 TCL1BO95988 128 aa6.69□□□□□ -1.34
RTN3-202ENST00000339997 RBX1P62877 108 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms