RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 AMN1Q8IY45 258 aa12.87□□□□□ -0.35
HMGA1-201ENST00000311487 NACAE9PAV3 2078 aa12.87□□□□□ -0.35
HMGA1-201ENST00000311487 A0A087WWL8 130 aa12.86□□□□□ -0.35
HMGA1-201ENST00000311487 POM121L12Q8N7R1 296 aa12.86□□□□□ -0.35
HMGA1-201ENST00000311487 RASL10AQ92737 203 aa12.86□□□□□ -0.35
HMGA1-201ENST00000311487 ZNF479Q96JC4 524 aa12.86□□□□□ -0.35
HMGA1-201ENST00000311487 CHCHD1Q96BP2 118 aaKnown RBP12.86□□□□□ -0.35
HMGA1-201ENST00000311487 SNAI2O43623 268 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 ZNF25P17030 456 aaPredicted RBP12.85□□□□□ -0.35
HMGA1-201ENST00000311487 KRTDAPP60985 99 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 FAM74A4Q5TZK3 123 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 ZFAND6Q6FIF0 208 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 ZNF664Q8N3J9 261 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 DNAH7Q8WXX0 4024 aa12.85□□□□□ -0.35
HMGA1-201ENST00000311487 M0R143 59 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 EREGO14944 169 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 OR5AL1P0C617 328 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 LGALS9BQ3B8N2 356 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 MRPL51Q4U2R6 128 aaKnown RBP12.84□□□□□ -0.35
HMGA1-201ENST00000311487 Q8N976 141 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 TMEM191AQ9H0A3 160 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 D6R8Y8 96 aa12.84□□□□□ -0.35
HMGA1-201ENST00000311487 F5H768 121 aa12.83□□□□□ -0.36
HMGA1-201ENST00000311487 C3orf79P0CE67 100 aa12.83□□□□□ -0.36
HMGA1-201ENST00000311487 CFAP126Q5VTH2 177 aa12.83□□□□□ -0.36
HMGA1-201ENST00000311487 LINC00612Q8N6U2 182 aa12.83□□□□□ -0.36
HMGA1-201ENST00000311487 OR4C5Q8NGB2 326 aa12.83□□□□□ -0.36
HMGA1-201ENST00000311487 C14orf178Q8N769 122 aaPredicted RBP12.82□□□□□ -0.36
HMGA1-201ENST00000311487 SYT8Q8NBV8 401 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 IGHV1-24A0A0C4DH33 117 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 PMCHL1Q16048 86 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 TEX43Q6ZNM6 134 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 ORMDL3Q8N138 153 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 RNF185Q96GF1 192 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 PRELID3AQ96N28 172 aa12.82□□□□□ -0.36
HMGA1-201ENST00000311487 DEFB131BA0A096LNP1 70 aa12.81□□□□□ -0.36
HMGA1-201ENST00000311487 MED14OSP0DP75 135 aa12.81□□□□□ -0.36
HMGA1-201ENST00000311487 EVI2AP22794 236 aa12.81□□□□□ -0.36
HMGA1-201ENST00000311487 PHLDA1Q8WV24 401 aaPredicted RBP12.81□□□□□ -0.36
HMGA1-201ENST00000311487 A0A0J9YY99 117 aa12.8□□□□□ -0.36
HMGA1-201ENST00000311487 Q6ZSN1 163 aa12.8□□□□□ -0.36
HMGA1-201ENST00000311487 TEX48A0A1B0GUV7 120 aa12.8□□□□□ -0.36
HMGA1-201ENST00000311487 ATP5G1P05496 136 aa12.8□□□□□ -0.36
HMGA1-201ENST00000311487 WWC2-AS2Q96NR7 200 aa12.8□□□□□ -0.36
HMGA1-201ENST00000311487 IGHV4-4A0A075B6R2 117 aa12.79□□□□□ -0.36
HMGA1-201ENST00000311487 SMKR1H3BMG3 65 aa12.79□□□□□ -0.36
HMGA1-201ENST00000311487 SNHG12Q9BXW3 62 aa12.79□□□□□ -0.36
HMGA1-201ENST00000311487 TENM2Q9NT68 2774 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 CKS2P33552 79 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 TRGV4A0A0C4DH28 118 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 RS1O15537 224 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 NXPH4O95158 308 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 NCR2O95944 276 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 CRYGDP07320 174 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 CACNG7P62955 275 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 FHL2Q14192 279 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 PRSS3P2Q8NHM4 247 aa12.78□□□□□ -0.36
HMGA1-201ENST00000311487 STARD9Q9P2P6 4700 aa12.77□□□□□ -0.36
HMGA1-201ENST00000311487 TRAV4A0A0B4J268 109 aa12.77□□□□□ -0.37
HMGA1-201ENST00000311487 NPYP01303 97 aa12.77□□□□□ -0.37
HMGA1-201ENST00000311487 FA2HQ7L5A8 372 aa12.77□□□□□ -0.37
HMGA1-201ENST00000311487 AP5S1Q9NUS5 200 aa12.77□□□□□ -0.37
HMGA1-201ENST00000311487 Q9UF83 564 aa12.77□□□□□ -0.37
HMGA1-201ENST00000311487 TRAV26-1A0A087WT03 109 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 IGLL5B9A064 214 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 MGPP08493 103 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 IFI27P40305 119 aaPredicted RBP12.76□□□□□ -0.37
HMGA1-201ENST00000311487 MUC7Q8TAX7 377 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 LYSTQ99698 3801 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 LOC389332A0A1B0GUA5 103 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 A8MWV9 139 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 LINC00173Q6ZV60 143 aa12.76□□□□□ -0.37
HMGA1-201ENST00000311487 TRAV10A0A0B4J240 114 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 LOC100131303A0A0U1RQF7 123 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 F5H697 171 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 GAS8-AS1O95177 125 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 LEPROTL1O95214 131 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 PPBPP02775 128 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 P0DMU3 169 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 FAM231AP0DMU4 169 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 FAM231CP0DMU5 169 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 PTH2Q96A98 100 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 HHLA3Q9XRX5 114 aa12.75□□□□□ -0.37
HMGA1-201ENST00000311487 TMEM238LA0A1B0GVL6 79 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 NPSP0C0P6 89 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 ZNF56Q15929 161 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 UFSP1Q6NVU6 142 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 AP1S3Q96PC3 154 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 TRAV26-2A0A0B4J265 109 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 SMIM17P0DL12 118 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 SMIM15Q7Z3B0 74 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 C18orf15Q96N68 181 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 VAMP8Q9BV40 100 aa12.74□□□□□ -0.37
HMGA1-201ENST00000311487 CHTOPQ9Y3Y2 248 aaKnown RBP12.74□□□□□ -0.37
HMGA1-201ENST00000311487 SPATA12Q7Z6I5 190 aa12.73□□□□□ -0.37
HMGA1-201ENST00000311487 SLC25A29Q8N8R3 303 aa12.73□□□□□ -0.37
HMGA1-201ENST00000311487 TMEM70Q9BUB7 260 aa12.73□□□□□ -0.37
HMGA1-201ENST00000311487 LAMTOR2Q9Y2Q5 125 aa12.73□□□□□ -0.37
HMGA1-201ENST00000311487 KIF25-AS1Q9Y6Z4 181 aa12.73□□□□□ -0.37
HMGA1-201ENST00000311487 A0A096LPF7 62 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms