RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 TRBV10-1A0A0K0K1A3 114 aa12.04□□□□□ -0.48
HCFC1-201ENST00000310441 FANCD2OSQ96PS1 177 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 SPAG11BQ08648 103 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 Q8NFD4 153 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 C1orf147Q96MC9 270 aaPredicted RBP12.03□□□□□ -0.48
HCFC1-201ENST00000310441 HIVEP3Q5T1R4 2406 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 C16orf54Q6UWD8 224 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 K7EMT4 169 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 FAM110AQ9BQ89 295 aa12.03□□□□□ -0.48
HCFC1-201ENST00000310441 FHL1Q13642 323 aa12.02□□□□□ -0.48
HCFC1-201ENST00000310441 MIAQ16674 131 aa12.02□□□□□ -0.48
HCFC1-201ENST00000310441 C4orf3Q8WVX3 66 aa12.02□□□□□ -0.48
HCFC1-201ENST00000310441 CRIPAKQ8N1N5 446 aa12.02□□□□□ -0.49
HCFC1-201ENST00000310441 TRBV6-1A0A0K0K1D8 114 aa12.02□□□□□ -0.49
HCFC1-201ENST00000310441 C10orf105Q8TEF2 133 aa12.02□□□□□ -0.49
HCFC1-201ENST00000310441 TEX22C9J3V5 150 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 ZFHX2Q9C0A1 2572 aaPredicted RBP12.01□□□□□ -0.49
HCFC1-201ENST00000310441 WI2-2373I1.2A0A1W2PRP0 233 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 F8W735 103 aaPredicted RBP12.01□□□□□ -0.49
HCFC1-201ENST00000310441 J3QKU1 62 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 IGLV3-1P01715 115 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 NDUFV3P56181 108 aaKnown RBP12.01□□□□□ -0.49
HCFC1-201ENST00000310441 IGLV11-55A0A075B6I3 123 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 MDFICQ9P1T7 246 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 PRB1P04280 392 aa12.01□□□□□ -0.49
HCFC1-201ENST00000310441 UFSP1Q6NVU6 142 aa12□□□□□ -0.49
HCFC1-201ENST00000310441 GPHB5Q86YW7 130 aa12□□□□□ -0.49
HCFC1-201ENST00000310441 HIST2H2BDQ6DRA6 164 aa12□□□□□ -0.49
HCFC1-201ENST00000310441 FAM236DA0A1B0GTK5 79 aa11.99□□□□□ -0.49
HCFC1-201ENST00000310441 NCR3O14931 201 aa11.99□□□□□ -0.49
HCFC1-201ENST00000310441 FAM236CP0DP71 79 aa11.99□□□□□ -0.49
HCFC1-201ENST00000310441 C3orf22Q8N5N4 141 aa11.99□□□□□ -0.49
HCFC1-201ENST00000310441 CENPVL3A0A0U1RRI6 287 aa11.99□□□□□ -0.49
HCFC1-201ENST00000310441 C17orf77Q96MU5 243 aa11.98□□□□□ -0.49
HCFC1-201ENST00000310441 PRB2P02812 416 aaPredicted RBP11.98□□□□□ -0.49
HCFC1-201ENST00000310441 NDUFA11Q86Y39 141 aa11.98□□□□□ -0.49
HCFC1-201ENST00000310441 RNF183Q96D59 192 aa11.98□□□□□ -0.49
HCFC1-201ENST00000310441 I3L2K1 104 aa11.98□□□□□ -0.49
HCFC1-201ENST00000310441 ODF1Q14990 250 aa11.98□□□□□ -0.49
HCFC1-201ENST00000310441 MAPK1IP1LQ8NDC0 245 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 FXYD2P54710 66 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 COL5A1P20908 1838 aaPredicted RBP11.97□□□□□ -0.49
HCFC1-201ENST00000310441 LYRM9A8MSI8 78 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 A0A0J9YXV3 536 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 IGHV3-30P01768 117 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 IGHV3-33P01772 117 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 IGHV3-30-3P0DP02 117 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 IGHV3-30-5P0DP03 117 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 C20orf173Q96LM9 149 aa11.97□□□□□ -0.49
HCFC1-201ENST00000310441 IGHV4-59P01825 116 aa11.96□□□□□ -0.49
HCFC1-201ENST00000310441 MIR7-3HGQ8N6C7 128 aa11.96□□□□□ -0.49
HCFC1-201ENST00000310441 C2orf70A6NJV1 201 aa11.96□□□□□ -0.49
HCFC1-201ENST00000310441 K7EIM0 57 aa11.96□□□□□ -0.49
HCFC1-201ENST00000310441 SLURP1P55000 103 aa11.96□□□□□ -0.49
HCFC1-201ENST00000310441 C5orf56Q8N8D9 126 aa11.96□□□□□ -0.5
HCFC1-201ENST00000310441 IGHV7-81A0A0B4J1V7 117 aa11.96□□□□□ -0.5
HCFC1-201ENST00000310441 WFDC2Q14508 124 aa11.96□□□□□ -0.5
HCFC1-201ENST00000310441 ODF3Q96PU9 254 aa11.96□□□□□ -0.5
HCFC1-201ENST00000310441 DEFB112Q30KQ8 113 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 CLEC2BQ92478 149 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 APRG1Q8IVJ8 170 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 DEFB113Q30KQ7 82 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 TRAV26-1A0A087WT03 109 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 PRSS33Q8NF86 280 aa11.95□□□□□ -0.5
HCFC1-201ENST00000310441 IMUPQ9GZP8 106 aa11.94□□□□□ -0.5
HCFC1-201ENST00000310441 DEFB136Q30KP8 78 aa11.94□□□□□ -0.5
HCFC1-201ENST00000310441 TRAV23DV6A0A075B6W5 121 aa11.94□□□□□ -0.5
HCFC1-201ENST00000310441 PRR30Q53SZ7 412 aaPredicted RBP11.93□□□□□ -0.5
HCFC1-201ENST00000310441 DAND5Q8N907 189 aa11.93□□□□□ -0.5
HCFC1-201ENST00000310441 CTSGP08311 255 aa11.93□□□□□ -0.5
HCFC1-201ENST00000310441 A0A0U1RQV1 116 aa11.93□□□□□ -0.5
HCFC1-201ENST00000310441 PRO0255Q9UI72 69 aa11.93□□□□□ -0.5
HCFC1-201ENST00000310441 RPL39P62891 51 aaKnown RBP11.93□□□□□ -0.5
HCFC1-201ENST00000310441 ANKRD39Q53RE8 183 aa11.92□□□□□ -0.5
HCFC1-201ENST00000310441 MPLKIPQ8TAP9 179 aa11.92□□□□□ -0.5
HCFC1-201ENST00000310441 LTBP2Q14767 1821 aa11.92□□□□□ -0.5
HCFC1-201ENST00000310441 SPATA12Q7Z6I5 190 aa11.92□□□□□ -0.5
HCFC1-201ENST00000310441 SMIM9A6NGZ8 99 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 IGKV1-17P01599 117 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 SMAD5-AS1Q9Y6J3 95 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 IGKV2D-26A0A0A0MRZ7 120 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 A0A0J9YXY3 114 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 AJUBAQ96IF1 538 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 IGHV4OR15-8A0A075B7B6 117 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 A0A087WW49 117 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 IGLV2-23P01705 113 aa11.91□□□□□ -0.5
HCFC1-201ENST00000310441 GTSF1Q8WW33 167 aa11.9□□□□□ -0.5
HCFC1-201ENST00000310441 KLK12Q9UKR0 248 aa11.9□□□□□ -0.5
HCFC1-201ENST00000310441 GATA1P15976 413 aaPredicted RBP11.9□□□□□ -0.5
HCFC1-201ENST00000310441 MYCNOSP40205 109 aa11.9□□□□□ -0.5
HCFC1-201ENST00000310441 DIAPH2-AS1Q14236 149 aa11.9□□□□□ -0.5
HCFC1-201ENST00000310441 PROK2Q9HC23 129 aa11.9□□□□□ -0.51
HCFC1-201ENST00000310441 FAM215AQ9Y5M1 114 aa11.9□□□□□ -0.51
HCFC1-201ENST00000310441 ZNF706Q9Y5V0 76 aaPredicted RBP11.9□□□□□ -0.51
HCFC1-201ENST00000310441 TCL1BO95988 128 aa11.89□□□□□ -0.51
HCFC1-201ENST00000310441 SERP1Q9Y6X1 66 aa11.89□□□□□ -0.51
HCFC1-201ENST00000310441 TLN2Q9Y4G6 2542 aa11.89□□□□□ -0.51
HCFC1-201ENST00000310441 IGF2-ASQ6U949 168 aa11.89□□□□□ -0.51
HCFC1-201ENST00000310441 SPRY4Q9C004 299 aa11.89□□□□□ -0.51
HCFC1-201ENST00000310441 FAM167A-AS1Q96KT0 104 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms