RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 A0A0J9YXY3 114 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 IGLV2-11P01706 119 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 LINC00205P59089 165 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 TMEM256-PLSCR3K7ERE1 68 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 TCL1BO95988 128 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 DEFB131AP59861 70 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 USF3Q68DE3 2245 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 CACNA1GO43497 2377 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 THADAQ6YHU6 1953 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 EXPH5Q8NEV8 1989 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 SMIM26A0A096LP01 95 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 FAM223BA6NKX1 122 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 FAM223AQ8IWN6 122 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 IGLV11-55A0A075B6I3 123 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 TIRAPP58753 221 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 EBI3Q14213 229 aa4.96□□□□□ -1.62
VPS35-201ENST00000299138 FAM186AA6NE01 2351 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 MED12Q93074 2177 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 IMUPQ9GZP8 106 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 LYNX1G3V0Z9 82 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 LYNX1P0DP58 116 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 FAM19A5Q7Z5A7 132 aaPredicted RBP4.95□□□□□ -1.62
VPS35-201ENST00000299138 K7EIM0 57 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 C4orf48Q5BLP8 95 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 RHPN1-AS1Q9BWJ2 59 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 ZGRF1Q86YA3 2104 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 BLCAPP62952 87 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 LINC01600Q96MT4 127 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 RTTNQ86VV8 2226 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 IGLV10-54A0A075B6I4 117 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 A0A0J9YX75 114 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 BSPH1Q075Z2 132 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 FAM27E3Q08E93 113 aa4.95□□□□□ -1.62
VPS35-201ENST00000299138 PLA2G1BP04054 148 aaKnown RBP4.94□□□□□ -1.62
VPS35-201ENST00000299138 USMG5Q96IX5 58 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 SPRY2O43597 315 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 P0DMU3 169 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 FAM231AP0DMU4 169 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 FAM231CP0DMU5 169 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 UCNP55089 124 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 CMC4P56277 68 aaPredicted RBP4.94□□□□□ -1.62
VPS35-201ENST00000299138 ODF3Q96PU9 254 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 FAM30AQ9NZY2 134 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 NDUFC1O43677 76 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 IGHV1-69P01742 117 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 FRMD6-AS1P0C7T7 363 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 POM121L12Q8N7R1 296 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 TOMM6Q96B49 74 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 CSDC2Q9Y534 153 aaKnown RBP4.94□□□□□ -1.62
VPS35-201ENST00000299138 C11orf86A6NJI1 115 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 SPAG11BQ08648 103 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 COL6A3P12111 3177 aa4.94□□□□□ -1.62
VPS35-201ENST00000299138 TNFRSF13BO14836 293 aaPredicted RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 FAM222AQ5U5X8 452 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 AGPAT4-IT1Q9H0P7 198 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 SPTBN5Q9NRC6 3674 aaKnown RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 H3BQ85 93 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 CRYGDP07320 174 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 PPDPFQ9H3Y8 114 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 A0A0J9YY99 117 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 DAZ2Q13117 558 aaKnown RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 DAZ4Q86SG3 579 aaKnown RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 DAZ1Q9NQZ3 744 aaKnown RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 DAZ3Q9NR90 486 aaKnown RBP4.93□□□□□ -1.62
VPS35-201ENST00000299138 LOC107984640A0A0U1RRK4 108 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 FBXL19-AS1Q494R0 122 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 CAMK2N2Q96S95 79 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 MYO7BQ6PIF6 2116 aa4.93□□□□□ -1.62
VPS35-201ENST00000299138 A0A096LNI7 61 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 APRG1Q8IVJ8 170 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 ZNF580Q9UK33 172 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 MRPS12O15235 138 aaKnown RBP4.92□□□□□ -1.62
VPS35-201ENST00000299138 PIP4P1Q86T03 277 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 TMEM89A2RUT3 159 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 SLPIP03973 132 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 CFAP126Q5VTH2 177 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 Q8N9L7 120 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 PSMG3-AS1Q96PY0 264 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 COX7CP15954 63 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 UBE2D1P51668 147 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 DIRC1Q969H9 104 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 WDFY3Q8IZQ1 3526 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 TRBV6-5A0A0K0K1A5 114 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 VMO1Q7Z5L0 202 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 HHLA3Q9XRX5 114 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 RMI2Q96E14 147 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 RPL39LQ96EH5 51 aaKnown RBP4.92□□□□□ -1.62
VPS35-201ENST00000299138 UNC80Q8N2C7 3258 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 GPR179Q6PRD1 2367 aa4.92□□□□□ -1.62
VPS35-201ENST00000299138 PHF3Q92576 2039 aaKnown RBP4.92□□□□□ -1.62
VPS35-201ENST00000299138 DOPEY2Q9Y3R5 2298 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 TRBV7-3A0A075B6L6 115 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 WFDC10AQ9H1F0 79 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 OVOL3O00110 214 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 KMT2EQ8IZD2 1858 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 CDH23Q9H251 3354 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 A0A096LNJ9 63 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 GNRH2O43555 120 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 BEAN1Q3B7T3 259 aa4.91□□□□□ -1.62
VPS35-201ENST00000299138 NDUFA4O00483 81 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms