RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 K7ENP7 123 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 LINC00315P59091 139 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 TMEM95Q3KNT9 176 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 ADAMTSL4-AS1Q5T5F5 129 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 DAND5Q8N907 189 aa10.09□□□□□ -0.79
SKA3-201ENST00000298260 VPS13CQ709C8 3753 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 FAM236AA0A1B0GUQ0 79 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 FAM236BA0A1B0GV22 79 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 LINC00694P0DN24 101 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 TRGV11A0A075B6L2 103 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 METTL26Q96S19 204 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 MDFICQ9P1T7 246 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 LRRK2Q5S007 2527 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 ZNF462Q96JM2 2506 aa10.08□□□□□ -0.8
SKA3-201ENST00000298260 USP9XQ93008 2570 aaPredicted RBP10.07□□□□□ -0.8
SKA3-201ENST00000298260 P0DMU3 169 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 FAM231AP0DMU4 169 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 FAM231CP0DMU5 169 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 VMO1Q7Z5L0 202 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 CSMD2Q7Z408 3487 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 POLR2KP53803 58 aaKnown RBP10.07□□□□□ -0.8
SKA3-201ENST00000298260 Q6Q795 121 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 UNQ9165/PRO28630Q6UXU0 137 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 LINC01560Q8TB33 94 aa10.07□□□□□ -0.8
SKA3-201ENST00000298260 TRAV21A0A0B4J279 112 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 A0A0J9YXY3 114 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 TMEM223A0PJW6 202 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 TRBV12-3P01733 135 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 RPL13AP40429 203 aaKnown RBP10.06□□□□□ -0.8
SKA3-201ENST00000298260 A0A0B4J2C4 111 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 IGFL3Q6UXB1 125 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 Q8N9W7 124 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 LINC00477Q96M19 166 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 YAE1D1Q9NRH1 226 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 KIF25-AS1Q9Y6Z4 181 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.06□□□□□ -0.88e-11■■■□□ 18.8
SKA3-201ENST00000298260 ATP5J2P56134 94 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 PAPPA-AS1Q5QFB9 102 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 ICOSQ9Y6W8 199 aa10.06□□□□□ -0.8
SKA3-201ENST00000298260 TRAV12-3A0A0B4J271 114 aa10.05□□□□□ -0.8
SKA3-201ENST00000298260 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.05□□□□□ -0.8
SKA3-201ENST00000298260 DUX5Q96PT3 197 aa10.05□□□□□ -0.8
SKA3-201ENST00000298260 CREBBPQ92793 2442 aa10.04□□□□□ -0.8
SKA3-201ENST00000298260 GRNP28799 593 aaKnown RBP10.04□□□□□ -0.8
SKA3-201ENST00000298260 CHD6Q8TD26 2715 aa10.04□□□□□ -0.8
SKA3-201ENST00000298260 LEPROTO15243 131 aa10.04□□□□□ -0.8
SKA3-201ENST00000298260 NACAE9PAV3 2078 aa10.04□□□□□ -0.8
SKA3-201ENST00000298260 IGKV3-20P01619 116 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 EDN2P20800 178 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 ITLN2Q8WWU7 325 aaPredicted RBP10.03□□□□□ -0.8
SKA3-201ENST00000298260 IGHV1-69DA0A0B4J2H0 117 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 ODF3BA8MYP8 253 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 M0R2P5 195 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 VCYO14598 125 aa10.03□□□□□ -0.8
SKA3-201ENST00000298260 TRBV30A0A0K0K1B3 111 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 A0A0U1RRA0 63 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 IGHV3-30-3P0DP02 117 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 TMEM219Q86XT9 240 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 Q8N6K4 173 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 LY6G5BQ8NDX9 201 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 SMCR5Q8TEV8 140 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 TMEM141Q96I45 108 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 TIMM17AQ99595 171 aa10.02□□□□□ -0.8
SKA3-201ENST00000298260 POLQO75417 2590 aa10.02□□□□□ -0.81
SKA3-201ENST00000298260 RS1O15537 224 aa10.02□□□□□ -0.81
SKA3-201ENST00000298260 CD3EP07766 207 aa10.02□□□□□ -0.81
SKA3-201ENST00000298260 LITAFQ99732 161 aa10.02□□□□□ -0.81
SKA3-201ENST00000298260 I3L3M4 83 aa10.02□□□□□ -0.81
SKA3-201ENST00000298260 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.01□□□□□ -0.81
SKA3-201ENST00000298260 IGHV3-11P01762 117 aa10.01□□□□□ -0.81
SKA3-201ENST00000298260 FAM110DQ8TAY7 271 aaPredicted RBP10.01□□□□□ -0.81
SKA3-201ENST00000298260 C9orf153Q5TBE3 101 aa10.01□□□□□ -0.81
SKA3-201ENST00000298260 TRAV12-2A0A075B6T6 113 aa10□□□□□ -0.81
SKA3-201ENST00000298260 IGHV3-73A0A0B4J1V6 119 aa10□□□□□ -0.81
SKA3-201ENST00000298260 TRAV41A0A0B4J266 112 aa10□□□□□ -0.81
SKA3-201ENST00000298260 CELSR2Q9HCU4 2923 aa10□□□□□ -0.81
SKA3-201ENST00000298260 IGHV4OR15-8A0A075B7B6 117 aa9.99□□□□□ -0.81
SKA3-201ENST00000298260 A0A087WW49 117 aa9.99□□□□□ -0.81
SKA3-201ENST00000298260 B9A039 149 aa9.99□□□□□ -0.81
SKA3-201ENST00000298260 ZFP36P26651 326 aaKnown RBP9.99□□□□□ -0.81
SKA3-201ENST00000298260 MRPL53Q96EL3 112 aaKnown RBP9.99□□□□□ -0.81
SKA3-201ENST00000298260 C2CD3Q4AC94 2353 aa9.99□□□□□ -0.81
SKA3-201ENST00000298260 EBI3Q14213 229 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 C9orf139Q6ZV77 190 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 POM121L12Q8N7R1 296 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 Q9UF83 564 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 U3KQE9 123 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 IGLV4-3A0A075B6K6 122 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 IGHV3OR16-10A0A075B7F0 116 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 CDSNQ15517 529 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 TIMM21Q9BVV7 248 aa9.98□□□□□ -0.81
SKA3-201ENST00000298260 CSDC2Q9Y534 153 aaKnown RBP9.98□□□□□ -0.81
SKA3-201ENST00000298260 TRBV27A0A0K0K1C4 114 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 ZNF625Q96I27 306 aaPredicted RBP9.97□□□□□ -0.81
SKA3-201ENST00000298260 PPP1R17O96001 155 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 HERVK_113P63121 156 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 NDUFA12Q9UI09 145 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 KLK9Q9UKQ9 250 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 DOPEY2Q9Y3R5 2298 aa9.97□□□□□ -0.81
SKA3-201ENST00000298260 LST1O00453 97 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms