RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 A0A087WX48 190 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 INSP01308 110 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 LINC00315P59091 139 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 KRTAP10-3P60369 221 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 SMIM2Q9BVW6 85 aa11.23□□□□□ -0.61
SF3B4-201ENST00000271628 PF4P02776 101 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 PLNP26678 52 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 ORMDL2Q53FV1 153 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 OCIAD2Q56VL3 154 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 UFSP1Q6NVU6 142 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 HIVEP1P15822 2718 aa11.22□□□□□ -0.61
SF3B4-201ENST00000271628 TRAV12-1A0A0B4J245 112 aa11.21□□□□□ -0.61
SF3B4-201ENST00000271628 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.21□□□□□ -0.61
SF3B4-201ENST00000271628 H3BUT2 72 aa11.21□□□□□ -0.61
SF3B4-201ENST00000271628 ZNF876PQ49A33 203 aa11.21□□□□□ -0.61
SF3B4-201ENST00000271628 MRPL35Q9NZE8 188 aaKnown RBP11.21□□□□□ -0.61
SF3B4-201ENST00000271628 HTN1P15515 57 aa11.21□□□□□ -0.62
SF3B4-201ENST00000271628 PCP4P48539 62 aa11.21□□□□□ -0.62
SF3B4-201ENST00000271628 TRPT1Q86TN4 253 aaKnown RBP11.21□□□□□ -0.62
SF3B4-201ENST00000271628 GTSCR1Q86UQ5 136 aa11.21□□□□□ -0.62
SF3B4-201ENST00000271628 LINC01587Q99440 93 aa11.21□□□□□ -0.62
SF3B4-201ENST00000271628 JPT2Q9H910 190 aa11.21□□□□□ -0.62
SF3B4-201ENST00000271628 TRBV25-1A0A075B6N4 114 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 SMIM13P0DJ93 91 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 PIK3CD-AS1Q5SR53 167 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 CHAC1Q9BUX1 264 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 A0A087WWL8 130 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 F5H697 171 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 K7EP34 96 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 ZNF415Q09FC8 603 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 BEAN1Q3B7T3 259 aa11.2□□□□□ -0.62
SF3B4-201ENST00000271628 H7C1H1 209 aa11.19□□□□□ -0.62
SF3B4-201ENST00000271628 K7ERU9 68 aa11.19□□□□□ -0.62
SF3B4-201ENST00000271628 RPL32P62910 135 aaKnown RBP11.19□□□□□ -0.62
SF3B4-201ENST00000271628 RPL39LQ96EH5 51 aaKnown RBP11.19□□□□□ -0.62
SF3B4-201ENST00000271628 A0A1W2PPM0 123 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 CRYGDP07320 174 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 GCSHP23434 173 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 FAM74A4Q5TZK3 123 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 SUMO4Q6EEV6 95 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 LINC00482Q8N8I6 264 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 PTH2Q96A98 100 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 TOMM6Q96B49 74 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 TM2D2Q9BX73 214 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 NIPBLQ6KC79 2804 aaeCLIP11.18□□□□□ -0.62
SF3B4-201ENST00000271628 F8VRH5 84 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 TAL2Q16559 108 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 OR5A1Q8NGJ0 315 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 RAB37Q96AX2 223 aa11.18□□□□□ -0.62
SF3B4-201ENST00000271628 M0R2P5 195 aa11.17□□□□□ -0.62
SF3B4-201ENST00000271628 SPXQ9BT56 116 aa11.17□□□□□ -0.62
SF3B4-201ENST00000271628 XCL2Q9UBD3 114 aa11.17□□□□□ -0.62
SF3B4-201ENST00000271628 ZNF56Q15929 161 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 CEND1Q8N111 149 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 SCGB3A1Q96QR1 104 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 TTTY13Q9BZ97 58 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 TRBV6-5A0A0K0K1A5 114 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 A8MWV9 139 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 FABP2P12104 132 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 INSL3P51460 131 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 FXYD2P54710 66 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 RNF151Q2KHN1 245 aa11.16□□□□□ -0.62
SF3B4-201ENST00000271628 VCYO14598 125 aa11.15□□□□□ -0.62
SF3B4-201ENST00000271628 SAMD5Q5TGI4 173 aa11.15□□□□□ -0.62
SF3B4-201ENST00000271628 CSTL1Q9H114 145 aa11.15□□□□□ -0.62
SF3B4-201ENST00000271628 FN1P02751 2386 aaKnown RBP11.15□□□□□ -0.62
SF3B4-201ENST00000271628 POLR2KP53803 58 aaKnown RBP11.15□□□□□ -0.63
SF3B4-201ENST00000271628 C11orf72Q8NBR9 251 aa11.15□□□□□ -0.63
SF3B4-201ENST00000271628 NEXN-AS1Q8NBZ9 246 aa11.15□□□□□ -0.63
SF3B4-201ENST00000271628 C19orf73Q9NVV2 129 aa11.15□□□□□ -0.63
SF3B4-201ENST00000271628 CHTOPQ9Y3Y2 248 aaKnown RBP11.15□□□□□ -0.63
SF3B4-201ENST00000271628 SPCS1Q9Y6A9 102 aa11.15□□□□□ -0.63
SF3B4-201ENST00000271628 LINC01549A6NIU2 74 aa11.14□□□□□ -0.63
SF3B4-201ENST00000271628 M0QY20 66 aa11.14□□□□□ -0.63
SF3B4-201ENST00000271628 KIR2DL4Q99706 377 aa11.14□□□□□ -0.63
SF3B4-201ENST00000271628 C1orf158Q8N1D5 194 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 VPS25Q9BRG1 176 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 C1QTNF4Q9BXJ3 329 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 EDA2RQ9HAV5 297 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 MORN3Q6PF18 240 aaPredicted RBP11.13□□□□□ -0.63
SF3B4-201ENST00000271628 C2orf66Q6UXQ4 117 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 MAPKAPK5-AS1Q8N8E1 139 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 NAA38Q9BRA0 125 aaKnown RBP11.13□□□□□ -0.63
SF3B4-201ENST00000271628 C2CD3Q4AC94 2353 aa11.13□□□□□ -0.63
SF3B4-201ENST00000271628 TRBV27A0A0K0K1C4 114 aa11.12□□□□□ -0.63
SF3B4-201ENST00000271628 SDHAF1A6NFY7 115 aa11.12□□□□□ -0.63
SF3B4-201ENST00000271628 PRM2P04554 102 aa11.12□□□□□ -0.63
SF3B4-201ENST00000271628 PHLDA1Q8WV24 401 aaPredicted RBP11.12□□□□□ -0.63
SF3B4-201ENST00000271628 C9orf66Q5T8R8 295 aa11.12□□□□□ -0.63
SF3B4-201ENST00000271628 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.12□□□□□ -0.63
SF3B4-201ENST00000271628 CITED1Q99966 193 aa11.12□□□□□ -0.63
SF3B4-201ENST00000271628 OR11H2Q8NH07 326 aa11.11□□□□□ -0.63
SF3B4-201ENST00000271628 NHP2Q9NX24 153 aaKnown RBP11.11□□□□□ -0.63
SF3B4-201ENST00000271628 IGHV3OR16-12A0A075B7B8 117 aa11.1□□□□□ -0.63
SF3B4-201ENST00000271628 RHODO00212 210 aa11.1□□□□□ -0.63
SF3B4-201ENST00000271628 BAALCQ8WXS3 180 aa11.1□□□□□ -0.63
SF3B4-201ENST00000271628 MYMXA0A1B0GTQ4 84 aa11.1□□□□□ -0.63
SF3B4-201ENST00000271628 NEGR1Q7Z3B1 354 aa11.1□□□□□ -0.63
SF3B4-201ENST00000271628 AZU1P20160 251 aa11.09□□□□□ -0.63
SF3B4-201ENST00000271628 TMEM263Q8WUH6 116 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms