RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 FAM19A4Q96LR4 140 aa12.7□□□□□ -0.38
FOXA1-201ENST00000250448 HIVEP2P31629 2446 aa12.7□□□□□ -0.38
FOXA1-201ENST00000250448 GNRH2O43555 120 aa12.69□□□□□ -0.38
FOXA1-201ENST00000250448 DUSP14O95147 198 aaKnown RBP12.69□□□□□ -0.38
FOXA1-201ENST00000250448 RNASE3P12724 160 aaKnown RBP12.69□□□□□ -0.38
FOXA1-201ENST00000250448 UBE2D1P51668 147 aa12.69□□□□□ -0.38
FOXA1-201ENST00000250448 LINC01549A6NIU2 74 aa12.69□□□□□ -0.38
FOXA1-201ENST00000250448 NDUFA4O00483 81 aa12.69□□□□□ -0.38
FOXA1-201ENST00000250448 ZNF702PQ9H963 129 aa12.69□□□□□ -0.38
FOXA1-201ENST00000250448 CFHR3Q02985 330 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 APRG1Q8IVJ8 170 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 DLX4Q92988 240 aaPredicted RBP12.68□□□□□ -0.38
FOXA1-201ENST00000250448 TRAV25A0A0B4J276 109 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 F6UB75 175 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 IGLV1-40P01703 118 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 CRYGDP07320 174 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 SRSF9Q13242 221 aaKnown RBP eCLIP12.68□□□□□ -0.38
FOXA1-201ENST00000250448 POM121L12Q8N7R1 296 aa12.68□□□□□ -0.38
FOXA1-201ENST00000250448 APOMO95445 188 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 C11orf86A6NJI1 115 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 NXPH4O95158 308 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 CFAP126Q5VTH2 177 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 IGLV4-69A0A075B6H9 119 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 KLHL30-AS1Q8NEE0 82 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 C1QTNF4Q9BXJ3 329 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 TP53TG1Q9Y2A0 90 aa12.67□□□□□ -0.38
FOXA1-201ENST00000250448 TSHBP01222 138 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 GAGE5Q13069 117 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 GAGE6Q13070 117 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 HERVK_113P61574 105 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 RPL11P62913 178 aaKnown RBP12.66□□□□□ -0.38
FOXA1-201ENST00000250448 ATP6V0E2Q8NHE4 81 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 KIF25-AS1Q9Y6Z4 181 aa12.66□□□□□ -0.38
FOXA1-201ENST00000250448 SMCPP49901 116 aaPredicted RBP12.65□□□□□ -0.38
FOXA1-201ENST00000250448 PPDPFQ9H3Y8 114 aa12.65□□□□□ -0.38
FOXA1-201ENST00000250448 ESM1Q9NQ30 184 aa12.65□□□□□ -0.38
FOXA1-201ENST00000250448 LINC00315P59091 139 aa12.65□□□□□ -0.38
FOXA1-201ENST00000250448 PAPPA-AS1Q5QFB9 102 aa12.65□□□□□ -0.38
FOXA1-201ENST00000250448 HIVEP1P15822 2718 aa12.65□□□□□ -0.38
FOXA1-201ENST00000250448 MUC4Q99102 2169 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 DNAJC9-AS1A6NH13 148 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 CD7P09564 240 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 CITED2Q99967 270 aaPredicted RBP12.64□□□□□ -0.39
FOXA1-201ENST00000250448 LOC107984156A0A0G2JMH3 177 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 PSMB8P28062 276 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 PSMB2P49721 201 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 EMP1P54849 157 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 FOXI1Q12951 378 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 ZFP2Q6ZN57 461 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 ARL17AQ8IVW1 177 aa12.64□□□□□ -0.39
FOXA1-201ENST00000250448 IGKV3-7A0A075B6H7 116 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 IGHV4OR15-8A0A075B7B6 117 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 A0A087WW49 117 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 A0A0J9YY99 117 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 IGIPA6NJ69 53 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 PMVKQ15126 192 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 SFTA2Q6UW10 78 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 USMG5Q96IX5 58 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 UBE2D3P61077 147 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 UBE2D2P62837 147 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 EDN2P20800 178 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 SUMO4Q6EEV6 95 aa12.63□□□□□ -0.39
FOXA1-201ENST00000250448 H3BUA1 57 aa12.62□□□□□ -0.39
FOXA1-201ENST00000250448 POLR2KP53803 58 aaKnown RBP12.62□□□□□ -0.39
FOXA1-201ENST00000250448 LYRM7Q5U5X0 104 aa12.62□□□□□ -0.39
FOXA1-201ENST00000250448 TMEM141Q96I45 108 aa12.62□□□□□ -0.39
FOXA1-201ENST00000250448 RPL39P62891 51 aaKnown RBP12.61□□□□□ -0.39
FOXA1-201ENST00000250448 C5orf47Q569G3 176 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 NDUFA11Q86Y39 141 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 DEFB104AQ8WTQ1 72 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 JPT2Q9H910 190 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 TSPEAR-AS2P59090 65 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 TIMM17AQ99595 171 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 ERG28Q9UKR5 140 aa12.61□□□□□ -0.39
FOXA1-201ENST00000250448 C18orf65Q6ZTR6 163 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 KIR2DL4Q99706 377 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 RHPN1-AS1Q9BWJ2 59 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 KLLNB2CW77 178 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 VCYO14598 125 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 NFE4Q86UQ8 179 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 SYT8Q8NBV8 401 aa12.6□□□□□ -0.39
FOXA1-201ENST00000250448 ZNF418Q8TF45 676 aaPredicted RBP12.6□□□□□ -0.39
FOXA1-201ENST00000250448 LY6G6DO95868 133 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 FAM159AQ6UWV7 190 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 SETXQ7Z333 2677 aaKnown RBP12.59□□□□□ -0.39
FOXA1-201ENST00000250448 A0A087WWL8 130 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 IGHV3-30P01768 117 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 IGHV3-30-5P0DP03 117 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 TMEM170BQ5T4T1 132 aa12.59□□□□□ -0.39
FOXA1-201ENST00000250448 F5H697 171 aa12.58□□□□□ -0.4
FOXA1-201ENST00000250448 Q6ZSV7 163 aa12.58□□□□□ -0.4
FOXA1-201ENST00000250448 C11orf44Q8N8P7 122 aa12.58□□□□□ -0.4
FOXA1-201ENST00000250448 CDIP1Q9H305 208 aa12.58□□□□□ -0.4
FOXA1-201ENST00000250448 SDHAF1A6NFY7 115 aa12.58□□□□□ -0.4
FOXA1-201ENST00000250448 NSD1Q96L73 2696 aaPredicted RBP12.58□□□□□ -0.4
FOXA1-201ENST00000250448 SRD5A1P18405 259 aa12.57□□□□□ -0.4
FOXA1-201ENST00000250448 DEFB136Q30KP8 78 aa12.57□□□□□ -0.4
FOXA1-201ENST00000250448 SLC25A29Q8N8R3 303 aa12.57□□□□□ -0.4
FOXA1-201ENST00000250448 ZNRF2Q8NHG8 242 aa12.57□□□□□ -0.4
FOXA1-201ENST00000250448 RAX2Q96IS3 184 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms