RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 TMEM141Q96I45 108 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 TIMM17AQ99595 171 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 CR1P17927 2039 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 M0QY20 66 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 APOMO95445 188 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 HOXD3P31249 432 aaPredicted RBP10.64□□□□□ -0.71
HIF3A-202ENST00000244303 SRSF9Q13242 221 aaKnown RBP eCLIP10.64□□□□□ -0.71
HIF3A-202ENST00000244303 MXRA5Q9NR99 2828 aa10.64□□□□□ -0.71
HIF3A-202ENST00000244303 A0A1B0GV72 72 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 TMEM238LA0A1B0GVL6 79 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 A6NJY4 79 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 INSL3P51460 131 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 PAPPA-AS1Q5QFB9 102 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 ZNF702PQ9H963 129 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 PRO0461Q9UI25 63 aa10.63□□□□□ -0.71
HIF3A-202ENST00000244303 LOC107984156A0A0G2JMH3 177 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 ELANEP08246 267 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 HERVK_113P61574 105 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 SFTA2Q6UW10 78 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 ARL17AQ8IVW1 177 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 Q96MF0 132 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 PTPN13Q12923 2485 aa10.62□□□□□ -0.71
HIF3A-202ENST00000244303 ZNF876PQ49A33 203 aa10.61□□□□□ -0.71
HIF3A-202ENST00000244303 ZNRF2Q8NHG8 242 aa10.61□□□□□ -0.71
HIF3A-202ENST00000244303 PSMB2P49721 201 aa10.61□□□□□ -0.71
HIF3A-202ENST00000244303 TMEM170BQ5T4T1 132 aa10.61□□□□□ -0.71
HIF3A-202ENST00000244303 TRPT1Q86TN4 253 aaKnown RBP10.61□□□□□ -0.71
HIF3A-202ENST00000244303 DLX4Q92988 240 aaPredicted RBP10.61□□□□□ -0.71
HIF3A-202ENST00000244303 UBE2E2Q96LR5 201 aa10.61□□□□□ -0.71
HIF3A-202ENST00000244303 CENPEQ02224 2701 aa10.6□□□□□ -0.71
HIF3A-202ENST00000244303 RBMY1A1P0DJD3 496 aaKnown RBP10.6□□□□□ -0.71
HIF3A-202ENST00000244303 RBMY1CP0DJD4 496 aa10.6□□□□□ -0.71
HIF3A-202ENST00000244303 TSPEAR-AS2P59090 65 aa10.6□□□□□ -0.71
HIF3A-202ENST00000244303 RBMY1FQ15415 496 aaKnown RBP10.6□□□□□ -0.71
HIF3A-202ENST00000244303 NSUN5P1Q3KNT7 163 aa10.6□□□□□ -0.71
HIF3A-202ENST00000244303 TCTEX1D4Q5JR98 221 aa10.6□□□□□ -0.71
HIF3A-202ENST00000244303 OPRPNQ99935 248 aaPredicted RBP10.6□□□□□ -0.71
HIF3A-202ENST00000244303 DEFB136Q30KP8 78 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 KRTAP1-3Q8IUG1 177 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 TRGV11A0A075B6L2 103 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 A0A0J9YY99 117 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 P0DMU3 169 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 FAM231AP0DMU4 169 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 FAM231CP0DMU5 169 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 SLURP1P55000 103 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 RHOHQ15669 191 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 C18orf65Q6ZTR6 163 aa10.59□□□□□ -0.71
HIF3A-202ENST00000244303 ZNF418Q8TF45 676 aaPredicted RBP10.59□□□□□ -0.71
HIF3A-202ENST00000244303 PRRC2AP48634 2157 aaKnown RBP10.58□□□□□ -0.72
HIF3A-202ENST00000244303 KNCNA6PVL3 124 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 CKS1BP61024 79 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 FOXI1Q12951 378 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 RNF152Q8N8N0 203 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 HTN1P15515 57 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 UBE2D1P51668 147 aa10.58□□□□□ -0.72
HIF3A-202ENST00000244303 EPG5Q9HCE0 2579 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 NAV2Q8IVL1 2488 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 I3L3M4 83 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 TSPAN13O95857 204 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 CFAP126Q5VTH2 177 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 NACAE9PAV3 2078 aa10.57□□□□□ -0.72
HIF3A-202ENST00000244303 DEFB131AP59861 70 aa10.56□□□□□ -0.72
HIF3A-202ENST00000244303 C20orf203Q8NBC4 194 aa10.56□□□□□ -0.72
HIF3A-202ENST00000244303 ABCA12Q86UK0 2595 aa10.56□□□□□ -0.72
HIF3A-202ENST00000244303 NFE4Q86UQ8 179 aa10.56□□□□□ -0.72
HIF3A-202ENST00000244303 IGHV3-73A0A0B4J1V6 119 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 LYRM7Q5U5X0 104 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 CREBBPQ92793 2442 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 J3QQQ9 107 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 ATP6V0E2Q8NHE4 81 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 AMELXQ99217 191 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 TEX15Q9BXT5 2789 aa10.55□□□□□ -0.72
HIF3A-202ENST00000244303 PRM2P04554 102 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 SMCPP49901 116 aaPredicted RBP10.54□□□□□ -0.72
HIF3A-202ENST00000244303 RBMY1BA6NDE4 496 aaKnown RBP10.54□□□□□ -0.72
HIF3A-202ENST00000244303 RBMY1EA6NEQ0 496 aaKnown RBP10.54□□□□□ -0.72
HIF3A-202ENST00000244303 IGHV3-30P01768 117 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 RBMY1DP0C7P1 496 aaKnown RBP10.54□□□□□ -0.72
HIF3A-202ENST00000244303 IGHV3-30-5P0DP03 117 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 LGALS3P17931 250 aaKnown RBP10.54□□□□□ -0.72
HIF3A-202ENST00000244303 PROK1P58294 105 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 Q8N2B8 174 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 SLC25A29Q8N8R3 303 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 DUX3Q96PT4 197 aa10.54□□□□□ -0.72
HIF3A-202ENST00000244303 AKAP9Q99996 3911 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 IGLV4-3A0A075B6K6 122 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 TMEM223A0PJW6 202 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 H3BMM0 161 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 ZNF469Q96JG9 3925 aaPredicted RBP10.53□□□□□ -0.72
HIF3A-202ENST00000244303 NDUFA11Q86Y39 141 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 PTH2Q96A98 100 aa10.53□□□□□ -0.72
HIF3A-202ENST00000244303 IGHV3-64A0A075B6Q5 118 aa10.52□□□□□ -0.73
HIF3A-202ENST00000244303 SPINK8P0C7L1 97 aa10.52□□□□□ -0.73
HIF3A-202ENST00000244303 SCGB1C2P0DMR2 95 aa10.52□□□□□ -0.73
HIF3A-202ENST00000244303 HIST2H2BCQ6DN03 193 aa10.52□□□□□ -0.73
HIF3A-202ENST00000244303 TMEM61Q8N0U2 210 aa10.52□□□□□ -0.73
HIF3A-202ENST00000244303 A0A0J9YXV3 536 aa10.51□□□□□ -0.73
HIF3A-202ENST00000244303 A8MTW9 85 aa10.51□□□□□ -0.73
HIF3A-202ENST00000244303 LEPROTO15243 131 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms