RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 TRPT1Q86TN4 253 aaKnown RBP13.97□□□□□ -0.17
YBX3-201ENST00000228251 GTSCR1Q86UQ5 136 aa13.97□□□□□ -0.17
YBX3-201ENST00000228251 C11orf72Q8NBR9 251 aa13.97□□□□□ -0.17
YBX3-201ENST00000228251 CYSLTR1Q9Y271 337 aa13.97□□□□□ -0.17
YBX3-201ENST00000228251 PRM2P04554 102 aa13.96□□□□□ -0.18
YBX3-201ENST00000228251 KIR2DL4Q99706 377 aa13.96□□□□□ -0.18
YBX3-201ENST00000228251 HIGD1BQ9P298 99 aa13.96□□□□□ -0.18
YBX3-201ENST00000228251 CHTOPQ9Y3Y2 248 aaKnown RBP13.96□□□□□ -0.18
YBX3-201ENST00000228251 M0R2P5 195 aa13.95□□□□□ -0.18
YBX3-201ENST00000228251 NPSP0C0P6 89 aa13.95□□□□□ -0.18
YBX3-201ENST00000228251 ZNF418Q8TF45 676 aaPredicted RBP13.95□□□□□ -0.18
YBX3-201ENST00000228251 TP53TG1Q9Y2A0 90 aa13.95□□□□□ -0.18
YBX3-201ENST00000228251 PROK1P58294 105 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 ZNF415Q09FC8 603 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 HSD52Q0P140 79 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 NSUN5P1Q3KNT7 163 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 TTTY13Q9BZ97 58 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 HECTD1Q9ULT8 2610 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 PRSS29PA6NIE9 313 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 INSP01308 110 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 SEC11AP67812 179 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 TIMM17AQ99595 171 aa13.94□□□□□ -0.18
YBX3-201ENST00000228251 RPL39P62891 51 aaKnown RBP13.93□□□□□ -0.18
YBX3-201ENST00000228251 RHOHQ15669 191 aa13.93□□□□□ -0.18
YBX3-201ENST00000228251 SETD2Q9BYW2 2564 aaPredicted RBP13.93□□□□□ -0.18
YBX3-201ENST00000228251 SETXQ7Z333 2677 aaKnown RBP13.92□□□□□ -0.18
YBX3-201ENST00000228251 BEAN1Q3B7T3 259 aa13.92□□□□□ -0.18
YBX3-201ENST00000228251 TMEM141Q96I45 108 aa13.92□□□□□ -0.18
YBX3-201ENST00000228251 SMR3AQ99954 134 aa13.92□□□□□ -0.18
YBX3-201ENST00000228251 NIPBLQ6KC79 2804 aaeCLIP13.91□□□□□ -0.18
YBX3-201ENST00000228251 A8MWV9 139 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 P0DMU3 169 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 FAM231AP0DMU4 169 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 FAM231CP0DMU5 169 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 HTN1P15515 57 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 IGLV4-69A0A075B6H9 119 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 C1orf158Q8N1D5 194 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 IL17DQ8TAD2 202 aa13.91□□□□□ -0.18
YBX3-201ENST00000228251 OR11H12B2RN74 326 aa13.9□□□□□ -0.18
YBX3-201ENST00000228251 MAPKAPK5-AS1Q8N8E1 139 aa13.9□□□□□ -0.18
YBX3-201ENST00000228251 DEFB104AQ8WTQ1 72 aa13.9□□□□□ -0.18
YBX3-201ENST00000228251 LINC01587Q99440 93 aa13.9□□□□□ -0.18
YBX3-201ENST00000228251 SPXQ9BT56 116 aa13.9□□□□□ -0.18
YBX3-201ENST00000228251 TRBV25-1A0A075B6N4 114 aa13.89□□□□□ -0.19
YBX3-201ENST00000228251 IGLV1-51P01701 117 aa13.89□□□□□ -0.19
YBX3-201ENST00000228251 CFAP126Q5VTH2 177 aa13.89□□□□□ -0.19
YBX3-201ENST00000228251 OTOGQ6ZRI0 2925 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 I3L3M4 83 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 PMVKQ15126 192 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 Q6ZSN1 163 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 STHQ8IWL8 128 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 C20orf203Q8NBC4 194 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 FAM110AQ9BQ89 295 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 CST9LQ9H4G1 147 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 C19orf73Q9NVV2 129 aa13.88□□□□□ -0.19
YBX3-201ENST00000228251 XCL2Q9UBD3 114 aa13.87□□□□□ -0.19
YBX3-201ENST00000228251 HIVEP2P31629 2446 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 E9PLD3 99 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 LY6G6DO95868 133 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 AZU1P20160 251 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 CHAC1Q9BUX1 264 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 RS1O15537 224 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 KRTAP10-3P60369 221 aa13.86□□□□□ -0.19
YBX3-201ENST00000228251 IGHV3-73A0A0B4J1V6 119 aa13.85□□□□□ -0.19
YBX3-201ENST00000228251 C11orf86A6NJI1 115 aa13.85□□□□□ -0.19
YBX3-201ENST00000228251 GIG44P09565 113 aaPredicted RBP13.85□□□□□ -0.19
YBX3-201ENST00000228251 CMC4P56277 68 aaPredicted RBP13.85□□□□□ -0.19
YBX3-201ENST00000228251 Q9UF83 564 aa13.85□□□□□ -0.19
YBX3-201ENST00000228251 RHODO00212 210 aa13.84□□□□□ -0.19
YBX3-201ENST00000228251 CCL25O15444 150 aa13.84□□□□□ -0.19
YBX3-201ENST00000228251 SAP30O75446 220 aa13.84□□□□□ -0.19
YBX3-201ENST00000228251 UBE2V1Q13404 147 aa13.84□□□□□ -0.19
YBX3-201ENST00000228251 MRPL16Q9NX20 251 aaKnown RBP13.84□□□□□ -0.19
YBX3-201ENST00000228251 IGHV3-53P01767 116 aa13.83□□□□□ -0.19
YBX3-201ENST00000228251 PAPPA-AS1Q5QFB9 102 aa13.83□□□□□ -0.19
YBX3-201ENST00000228251 RNASE8Q8TDE3 154 aaKnown RBP13.83□□□□□ -0.19
YBX3-201ENST00000228251 TRAV8-6A0A0B4J262 113 aa13.83□□□□□ -0.2
YBX3-201ENST00000228251 FAM104AQ969W3 186 aa13.83□□□□□ -0.2
YBX3-201ENST00000228251 A6NDN8 102 aa13.82□□□□□ -0.2
YBX3-201ENST00000228251 H3BRM9 83 aa13.82□□□□□ -0.2
YBX3-201ENST00000228251 OR11H2Q8NH07 326 aa13.82□□□□□ -0.2
YBX3-201ENST00000228251 TM2D2Q9BX73 214 aa13.82□□□□□ -0.2
YBX3-201ENST00000228251 NFE4Q86UQ8 179 aa13.81□□□□□ -0.2
YBX3-201ENST00000228251 ZNRF2Q8NHG8 242 aa13.81□□□□□ -0.2
YBX3-201ENST00000228251 PRADC1Q9BSG0 188 aa13.81□□□□□ -0.2
YBX3-201ENST00000228251 JMJD1CQ15652 2540 aa13.81□□□□□ -0.2
YBX3-201ENST00000228251 FXYD2P54710 66 aa13.81□□□□□ -0.2
YBX3-201ENST00000228251 MYMXA0A1B0GTQ4 84 aa13.8□□□□□ -0.2
YBX3-201ENST00000228251 TAL2Q16559 108 aa13.8□□□□□ -0.2
YBX3-201ENST00000228251 NDUFA11Q86Y39 141 aa13.8□□□□□ -0.2
YBX3-201ENST00000228251 OPRPNQ99935 248 aaPredicted RBP13.8□□□□□ -0.2
YBX3-201ENST00000228251 PYGO1Q9Y3Y4 419 aa13.8□□□□□ -0.2
YBX3-201ENST00000228251 IGLV4-3A0A075B6K6 122 aa13.79□□□□□ -0.2
YBX3-201ENST00000228251 DNAJC30Q96LL9 226 aa13.79□□□□□ -0.2
YBX3-201ENST00000228251 NSD1Q96L73 2696 aaPredicted RBP13.79□□□□□ -0.2
YBX3-201ENST00000228251 K7EP13 123 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 WFDC10AQ9H1F0 79 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 TNFRSF18Q9Y5U5 241 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 TRBV7-3A0A075B6L6 115 aa13.78□□□□□ -0.2
YBX3-201ENST00000228251 PTTG1IPP53801 180 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms