RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CD24P25063 80 aa3.61□□□□□ -1.83
SCN1A-220ENST00000641603 COL4A4P53420 1690 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-220ENST00000641603 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 K7EMT4 169 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 VPREB1P12018 145 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 LOXP28300 417 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 HIGD2BQ4VC39 106 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 CDIP1Q9H305 208 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF106Q9H2Y7 1883 aaKnown RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-23P01764 117 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 SHISA2Q6UWI4 295 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 THSD7BQ9C0I4 1608 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3OR16-12A0A075B7B8 117 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-35A0A0C4DH35 117 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 IGHV3-66A0A0C4DH42 116 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 LECT2O14960 151 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 KLHL30-AS1Q8NEE0 82 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 TMEM263Q8WUH6 116 aaKnown RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 CLEC2BQ92478 149 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 RMI2Q96E14 147 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV3D-20A0A0C4DH25 116 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 LINC01546A6NGU7 62 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF561-AS1K7EIQ3 104 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 ZNF80P51504 273 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 SPTAN1Q13813 2472 aaKnown RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 KLK10O43240 276 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 FGF23Q9GZV9 251 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-220ENST00000641603 MLANAQ16655 118 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 LINC00308Q8TCZ7 52 aa3.6□□□□□ -1.83
SCN1A-220ENST00000641603 ALPK2Q86TB3 2170 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV1OR2-108A0A075B7D4 117 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 A0A1B0GW54 56 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 C14orf132Q9NPU4 83 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 TRBV27A0A0K0K1C4 114 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 TTTY13Q9BZ97 58 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 K7EIM0 57 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 CADP27708 2225 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 TICRRQ7Z2Z1 1910 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 RS1O15537 224 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 IGKV3-20P01619 116 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 MIFP14174 115 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 VWCEQ96DN2 955 aa3.59□□□□□ -1.83
SCN1A-220ENST00000641603 HRCT1Q6UXD1 115 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 TMEM131Q92545 1883 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 DKK1O94907 266 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 RSPO4Q2I0M5 234 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-220ENST00000641603 RIF1Q5UIP0 2472 aaKnown RBP3.59□□□□□ -1.84
SCN1A-220ENST00000641603 S4R3C0 116 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 COL4A5P29400 1685 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 CCL21O00585 134 aa3.59□□□□□ -1.84
SCN1A-220ENST00000641603 ZNF22P17026 224 aaPredicted RBP3.59□□□□□ -1.84
SCN1A-220ENST00000641603 IGKV2D-26A0A0A0MRZ7 120 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 A0A0G2JNJ9 132 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 SBSPONQ8IVN8 264 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 Q9UFV3 132 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 C11orf53Q8IXP5 236 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 C7orf69Q9H7B7 122 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 SPRR3Q9UBC9 169 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 HELZP42694 1942 aaKnown RBP3.58□□□□□ -1.84
SCN1A-220ENST00000641603 HHLA3Q9XRX5 114 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 SDIM1Q6ZPB5 146 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 DIRC1Q969H9 104 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 K7ENP7 123 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 PPDPFQ9H3Y8 114 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 RNF114Q9Y508 228 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 TRAV23DV6A0A075B6W5 121 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 OVOL3O00110 214 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 FRMD6-AS1P0C7T7 363 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 ASPHD1Q5U4P2 390 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 CCKP06307 115 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 LOXL1Q08397 574 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-220ENST00000641603 RPL39LQ96EH5 51 aaKnown RBP3.58□□□□□ -1.84
SCN1A-220ENST00000641603 IGLV2-23P01705 113 aa3.58□□□□□ -1.84
SCN1A-220ENST00000641603 ZNF672Q499Z4 452 aaPredicted RBP3.58□□□□□ -1.84
SCN1A-220ENST00000641603 HEATR5AQ86XA9 2040 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 K7EQD1 137 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 CTSGP08311 255 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 ATP5J2P56134 94 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 PMAIP1Q13794 54 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 IGKV1D-37A0A075B6S9 117 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 BPY2O14599 106 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 CXCL6P80162 114 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 IGHV3-11P01762 117 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 FAM27E3Q08E93 113 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 MRGPRG-AS1Q2M3A8 158 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 IGHV3OR16-8A0A075B7F1 116 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 J3QLI3 93 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 CGB3P0DN86 165 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 CGB7P0DN87 165 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 GATA1P15976 413 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-220ENST00000641603 CCL24O00175 119 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 PRR31Q5SQ13 230 aa3.57□□□□□ -1.84
SCN1A-220ENST00000641603 HOXB4P17483 251 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-220ENST00000641603 COX17Q14061 63 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 ATP6V0E1O15342 81 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 WISP1O95388 367 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 MAPKAPK5-AS1Q8N8E1 139 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 IGFL3Q6UXB1 125 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 PRO0461Q9UI25 63 aa3.56□□□□□ -1.84
SCN1A-220ENST00000641603 MSRB2Q9Y3D2 182 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms