RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 IGLC3P0DOY3 106 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 LYPD6Q86Y78 171 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 ZNF491Q8N8L2 437 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 HHLA3Q9XRX5 114 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 LENEPQ9Y5L5 61 aa4.8□□□□□ -1.64
SCN1A-212ENST00000636194 ZFHX2Q9C0A1 2572 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV1-58A0A0C4DH39 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 DEFB112Q30KQ8 113 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 ZNF524Q96C55 264 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 SMAD5-AS1Q9Y6J3 95 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 A0A087WZ39 114 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 COX8AP10176 69 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGKV1-16P04430 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 WDR83OSQ9Y284 106 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 INSL3P51460 131 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 NHSL1Q5SYE7 1610 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 COL18A1P39060 1754 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGLV3-9A0A075B6K5 115 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV7-4-1A0A0J9YVY3 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 COX7BP24311 80 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 PMAIP1Q13794 54 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 LGALS9BQ3B8N2 356 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 LGALS9CQ6DKI2 356 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 RBAKDNA6NC62 111 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV3-30P01768 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV3-33P01772 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV3-30-3P0DP02 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 IGHV3-30-5P0DP03 117 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 NANOS2P60321 138 aaKnown RBP4.79□□□□□ -1.64
SCN1A-212ENST00000636194 SPATA12Q7Z6I5 190 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 HIST3H2BBQ8N257 126 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 JMJD1CQ15652 2540 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 C1orf195Q5TG92 126 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 GGNQ86UU5 652 aa4.79□□□□□ -1.64
SCN1A-212ENST00000636194 LYNX1G3V0Z9 82 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 GREM1O60565 184 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 FSHBP01225 129 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 LYNX1P0DP58 116 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 THSD7AQ9UPZ6 1657 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 CFC1BP0CG36 223 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 CFC1P0CG37 223 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 G3V4G9 280 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 ATP6V0E1O15342 81 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 CCL25O15444 150 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 RNASE13Q5GAN3 156 aaKnown RBP4.78□□□□□ -1.64
SCN1A-212ENST00000636194 IGKV1D-13A0A0B4J2D9 117 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 IGKV1-13P0DP09 117 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 AMTNQ6UX39 209 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 LINC00474Q9P2X8 69 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 NAV2Q8IVL1 2488 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 A0A0G2JNJ9 132 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 C15orf62A8K5M9 175 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 CTHRC1Q96CG8 243 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 TMEM14CQ9P0S9 112 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 Q9UFV3 132 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 IGKV1-8A0A0C4DH67 115 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 C3orf79P0CE67 100 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 C5orf38Q86SI9 138 aa4.78□□□□□ -1.64
SCN1A-212ENST00000636194 LYPD3O95274 346 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 CRYGSP22914 178 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 SPINK6Q6UWN8 80 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV2D-26A0A0A0MRZ7 120 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 WI2-2373I1.2A0A1W2PRP0 233 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 REG4Q9BYZ8 158 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 SPRR3Q9UBC9 169 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 COL5A3P25940 1745 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV1-6A0A0C4DH72 117 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 Q6ZUT4 128 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 NTN5Q8WTR8 489 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-212ENST00000636194 J3QRE1 110 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 SPAG11BQ08648 103 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 PRSS57Q6UWY2 283 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 AMELYQ99218 206 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 TFF1P04155 84 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 MED14OSP0DP75 135 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 NTF4P34130 210 aa4.77□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV1-27A0A075B6S5 117 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 HILS1P60008 231 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 HIGD2AQ9BW72 106 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 CPAMD8Q8IZJ3 1885 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 LINC01548A6NM66 108 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 MRPL51Q4U2R6 128 aaKnown RBP4.76□□□□□ -1.65
SCN1A-212ENST00000636194 CRYGDP07320 174 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 PRR30Q53SZ7 412 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-212ENST00000636194 USP24Q9UPU5 2620 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 CD300CQ08708 224 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 LGALS9O00182 355 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 IGLV3-21P80748 117 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-212ENST00000636194 MRPL35Q9NZE8 188 aaKnown RBP4.76□□□□□ -1.65
SCN1A-212ENST00000636194 DKK2Q9UBU2 259 aa4.76□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV2-24A0A0C4DH68 120 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 MST1P26927 711 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 C11orf45Q8TAV5 145 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 IGKV1D-37A0A075B6S9 117 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 V9GYV3 84 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 EPG5Q9HCE0 2579 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 A0A096LNI7 61 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 IGLV3-32A0A0A0MS00 114 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 PRR25Q96S07 402 aa4.75□□□□□ -1.65
SCN1A-212ENST00000636194 CENPVL1A0A0U1RR11 272 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 176 ms