RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 KNCNA6PVL3 124 aa10.44□□□□□ -0.74
CLN3-242ENST00000635958 APRG1Q8IVJ8 170 aa10.44□□□□□ -0.74
CLN3-242ENST00000635958 ASCL2Q99929 193 aa10.44□□□□□ -0.74
CLN3-242ENST00000635958 NBEAL1Q6ZS30 2694 aa10.44□□□□□ -0.74
CLN3-242ENST00000635958 D6R8Y8 96 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 H3BRM9 83 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 IFI27P40305 119 aaPredicted RBP10.43□□□□□ -0.74
CLN3-242ENST00000635958 PCP4P48539 62 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 RBX1P62877 108 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 AMTNQ6UX39 209 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 GTF2H5Q6ZYL4 71 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 FER1L6-AS1Q8NA97 138 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 C8orf49Q96NF6 230 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 CNFNQ9BYD5 112 aa10.43□□□□□ -0.74
CLN3-242ENST00000635958 MUC21A0A0G2JKD1 596 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 MUC21A0A140T8X8 626 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 FABP5P3A8MUU1 101 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 IGLC6P0CF74 106 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 CKS2P33552 79 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 EGFEM1PQ0D2K5 195 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 HSD52Q0P140 79 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 MRPL51Q4U2R6 128 aaKnown RBP10.42□□□□□ -0.74
CLN3-242ENST00000635958 OXLD1Q5BKU9 147 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 MUC21Q5SSG8 566 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 BOD1L2Q8IYS8 172 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 ZFAND2AQ8N6M9 145 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 AP1S3Q96PC3 154 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 NXT2Q9NPJ8 142 aaKnown RBP10.42□□□□□ -0.74
CLN3-242ENST00000635958 CMYA5Q8N3K9 4069 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 IFI27L1Q96BM0 104 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 MAP1LC3AQ9H492 121 aa10.42□□□□□ -0.74
CLN3-242ENST00000635958 C2orf91Q6ZV80 131 aa10.41□□□□□ -0.74
CLN3-242ENST00000635958 GTSCR1Q86UQ5 136 aa10.41□□□□□ -0.74
CLN3-242ENST00000635958 RNASE8Q8TDE3 154 aaKnown RBP10.41□□□□□ -0.74
CLN3-242ENST00000635958 KLLNB2CW77 178 aa10.4□□□□□ -0.74
CLN3-242ENST00000635958 LEPP41159 167 aa10.4□□□□□ -0.74
CLN3-242ENST00000635958 TRPT1Q86TN4 253 aaKnown RBP10.4□□□□□ -0.74
CLN3-242ENST00000635958 Q8N1Y9 231 aa10.4□□□□□ -0.74
CLN3-242ENST00000635958 TPPP3Q9BW30 176 aa10.4□□□□□ -0.74
CLN3-242ENST00000635958 A0A096LNJ9 63 aa10.4□□□□□ -0.75
CLN3-242ENST00000635958 RBMY1BA6NDE4 496 aaKnown RBP10.4□□□□□ -0.75
CLN3-242ENST00000635958 RBMY1EA6NEQ0 496 aaKnown RBP10.4□□□□□ -0.75
CLN3-242ENST00000635958 RBMY1DP0C7P1 496 aaKnown RBP10.4□□□□□ -0.75
CLN3-242ENST00000635958 ZNF80P51504 273 aaPredicted RBP10.4□□□□□ -0.75
CLN3-242ENST00000635958 TWIST1Q15672 202 aa10.4□□□□□ -0.75
CLN3-242ENST00000635958 STHQ8IWL8 128 aa10.4□□□□□ -0.75
CLN3-242ENST00000635958 AMN1Q8IY45 258 aa10.4□□□□□ -0.75
CLN3-242ENST00000635958 C7orf71A4D174 169 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 H0Y8G0 127 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 K7ERU9 68 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 ATP5LO75964 103 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 IGKV3-20P01619 116 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 FGF6P10767 208 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 SAMD5Q5TGI4 173 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 AMMECR1LQ6DCA0 310 aa10.39□□□□□ -0.75
CLN3-242ENST00000635958 C9orf118A6NHY6 69 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 CBY3A6NI87 242 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 PRSS47A8MTI9 375 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 FCER1GP30273 86 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 PRR9Q5T870 116 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 WFDC10AQ9H1F0 79 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 CST9LQ9H4G1 147 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 HIGD1BQ9P298 99 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 MGAM2Q2M2H8 2515 aa10.38□□□□□ -0.75
CLN3-242ENST00000635958 LOC389332A0A1B0GUA5 103 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 KRTAP10-11P60412 298 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 Q6ZVH6 145 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 SMIM15Q7Z3B0 74 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 GAGE10A6NGK3 116 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 NCR2O95944 276 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 KIR3DS1Q14943 382 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 OCIAD2Q56VL3 154 aa10.37□□□□□ -0.75
CLN3-242ENST00000635958 TIMM8BQ9Y5J9 83 aaPredicted RBP10.37□□□□□ -0.75
CLN3-242ENST00000635958 CACNG7P62955 275 aa10.36□□□□□ -0.75
CLN3-242ENST00000635958 SPINK13Q1W4C9 94 aa10.36□□□□□ -0.75
CLN3-242ENST00000635958 ZMAT4Q9H898 229 aa10.36□□□□□ -0.75
CLN3-242ENST00000635958 TRAV21A0A0B4J279 112 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 G3V4G9 280 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 RNASE4P34096 147 aaKnown RBP10.35□□□□□ -0.75
CLN3-242ENST00000635958 COTL1Q14019 142 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 ANKRD39Q53RE8 183 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 OR5A1Q8NGJ0 315 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 TMSB15BA0A087X1C1 80 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 GAGE12BA1L429 117 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 NPYP01303 97 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 ORM1P02763 201 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 ZNF575Q86XF7 245 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 Q8N8P6 123 aa10.35□□□□□ -0.75
CLN3-242ENST00000635958 J3KRW8 73 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 EVI2AP22794 236 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 MORN3Q6PF18 240 aaPredicted RBP10.34□□□□□ -0.75
CLN3-242ENST00000635958 Q6ZQT7 251 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 RNF185Q96GF1 192 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 C11orf21Q9P2W6 132 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 NOTCH1P46531 2555 aa10.34□□□□□ -0.75
CLN3-242ENST00000635958 TRAV12-2A0A075B6T6 113 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 GIG44P09565 113 aaPredicted RBP10.33□□□□□ -0.76
CLN3-242ENST00000635958 IGHV4-4A0A075B6R2 117 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 TRAV8-6A0A0B4J262 113 aa10.33□□□□□ -0.76
CLN3-242ENST00000635958 TRAV12-3A0A0B4J271 114 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms