RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 TMEM208Q9BTX3 173 aa6.91□□□□□ -1.3
PDLIM5-223ENST00000627587 MDFICQ9P1T7 246 aa6.91□□□□□ -1.3
PDLIM5-223ENST00000627587 NACAE9PAV3 2078 aa6.91□□□□□ -1.3
PDLIM5-223ENST00000627587 NXPH4O95158 308 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 RPL35AP18077 110 aaKnown RBP6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 AKR1D1P51857 326 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 MRPL51Q4U2R6 128 aaKnown RBP6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 MORN3Q6PF18 240 aaPredicted RBP6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 ORMDL3Q8N138 153 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 DEFB125Q8N687 156 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 C9orf85Q96MD7 179 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 AP1S3Q96PC3 154 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 RCHY1Q96PM5 261 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 LINC00467Q9BRT7 94 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 C1QTNF4Q9BXJ3 329 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 HUWE1Q7Z6Z7 4374 aaKnown RBP6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 SACSQ9NZJ4 4579 aa6.9□□□□□ -1.3
PDLIM5-223ENST00000627587 D6R8Y8 96 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 SERF1AO75920 110 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 GAS8-AS1O95177 125 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 RAB4AP20338 218 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 CKS2P33552 79 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 SYT8Q8NBV8 401 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 URB1-AS1Q96HZ7 61 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 ZMAT4Q9H898 229 aa6.9□□□□□ -1.31
PDLIM5-223ENST00000627587 PPBPP02775 128 aa6.89□□□□□ -1.31
PDLIM5-223ENST00000627587 ZNF415Q09FC8 603 aa6.89□□□□□ -1.31
PDLIM5-223ENST00000627587 IQCJQ1A5X6 159 aa6.89□□□□□ -1.31
PDLIM5-223ENST00000627587 C1orf158Q8N1D5 194 aa6.89□□□□□ -1.31
PDLIM5-223ENST00000627587 DPH3P1Q9H4G8 78 aa6.89□□□□□ -1.31
PDLIM5-223ENST00000627587 IGHV3OR16-12A0A075B7B8 117 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 ESDP10768 282 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 FABP4P15090 132 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 LINC00518Q8N0U6 118 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 PRELID3AQ96N28 172 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 GOLT1BQ9Y3E0 138 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 RYR2Q92736 4967 aa6.88□□□□□ -1.31
PDLIM5-223ENST00000627587 SMIM17P0DL12 118 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 SBSPONQ8IVN8 264 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 LINC00528Q8N1L1 170 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 C14orf178Q8N769 122 aaPredicted RBP6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 CSNK1G2-AS1Q8NCQ2 148 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 TMEM18Q96B42 140 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 HIST1H2BLQ99880 126 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 CBY1Q9Y3M2 126 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 SMKR1H3BMG3 65 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 NCR2O95944 276 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 LINC00315P59091 139 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 ZNF876PQ49A33 203 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 C11orf72Q8NBR9 251 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 SAMD10Q9BYL1 202 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 CSTL1Q9H114 145 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 JPT2Q9H910 190 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 LAMTOR2Q9Y2Q5 125 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 KIF25-AS1Q9Y6Z4 181 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 DNAH1Q9P2D7 4330 aa6.87□□□□□ -1.31
PDLIM5-223ENST00000627587 LCE6AA0A183 80 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 HSBP1O75506 76 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 MGPP08493 103 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 AZU1P20160 251 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 C4orf48Q5BLP8 95 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 RNASEKQ6P5S7 137 aaKnown RBP6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 NIT1Q86X76 327 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 MRAP2Q96G30 205 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 PACRGQ96M98 296 aaPredicted RBP6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 GSN-AS1Q9NRJ2 163 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 STAB2Q8WWQ8 2551 aa6.86□□□□□ -1.31
PDLIM5-223ENST00000627587 PCP4L1A6NKN8 68 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 M0R2P5 195 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 NPYP01303 97 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 LINC00614P0C842 121 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 GATA1P15976 413 aaPredicted RBP6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 OR10D4PQ8NGN7 298 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 PRSS3P2Q8NHM4 247 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 CHCHD1Q96BP2 118 aaKnown RBP6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 SPXQ9BT56 116 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 DNAH7Q8WXX0 4024 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 TRAV26-2A0A0B4J265 109 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 TNFRSF6BO95407 300 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 PMCHP20382 165 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 AMTP48728 403 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 PIK3CD-AS1Q5SR53 167 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 POM121L12Q8N7R1 296 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 TMEM263Q8WUH6 116 aaKnown RBP6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 MAP1LC3AQ9H492 121 aa6.85□□□□□ -1.31
PDLIM5-223ENST00000627587 A0A087WWL8 130 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 LOC389332A0A1B0GUA5 103 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 A8MZ25 164 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 MAJINQ3KP22 176 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 FAM74A4Q5TZK3 123 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 ZNF705AQ6ZN79 300 aaPredicted RBP6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 FA2HQ7L5A8 372 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 IL17DQ8TAD2 202 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 RNASE8Q8TDE3 154 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 PTH2Q96A98 100 aa6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 CHTOPQ9Y3Y2 248 aaKnown RBP6.84□□□□□ -1.31
PDLIM5-223ENST00000627587 BIRC6Q9NR09 4857 aa6.84□□□□□ -1.32
PDLIM5-223ENST00000627587 A8MWV9 139 aa6.83□□□□□ -1.32
PDLIM5-223ENST00000627587 RRN3P1Q2M238 152 aa6.83□□□□□ -1.32
PDLIM5-223ENST00000627587 NRACQ8N912 160 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms