RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ZNF331Q9NQX6 463 aaPredicted RBP3.41□□□□□ -1.86
VPS29-212ENST00000621131 TRAPPC1Q9Y5R8 145 aa3.41□□□□□ -1.86
VPS29-212ENST00000621131 EPPK1P58107 5090 aaKnown RBP3.41□□□□□ -1.86
VPS29-212ENST00000621131 PCLOQ9Y6V0 5065 aa3.4□□□□□ -1.86
VPS29-212ENST00000621131 TNCP24821 2201 aa3.4□□□□□ -1.86
VPS29-212ENST00000621131 PLXNB1O43157 2135 aa3.4□□□□□ -1.86
VPS29-212ENST00000621131 TRAV9-2A0A087WT02 112 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 IGHV3-49A0A0A0MS15 119 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 IGHV3-66A0A0C4DH42 116 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 A0A1B0GW15 77 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 CLPSL1A2RUU4 121 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 FAM231BA6NCW3 169 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 IZUMO1RA6ND01 250 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 A8MWP6 167 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 K7EN84 100 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 CHEK1O14757 476 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 HLA-DQA1P01909 254 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 PFN1P07737 140 aaKnown RBP3.4□□□□□ -1.87
VPS29-212ENST00000621131 CXCL1P09341 107 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 LCN12Q6JVE5 192 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 RASL11AQ6T310 242 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 ATP5L2Q7Z4Y8 100 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 ZFP82Q8N141 532 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 OR2D3Q8NGH3 330 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 DYNLRB2Q8TF09 96 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 TSKUQ8WUA8 353 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 YPEL4Q96NS1 127 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 RHPN1-AS1Q9BWJ2 59 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 SMPXQ9UHP9 88 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 V9GYV3 84 aa3.4□□□□□ -1.87
VPS29-212ENST00000621131 IGHV3OR16-13A0A075B7E8 117 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 IGKV2-40A0A087WW87 121 aaPredicted RBP3.39□□□□□ -1.87
VPS29-212ENST00000621131 IGHV3-74A0A0B4J1X5 117 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 SMIM27A0A1W2PRY6 76 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TMEM189A5PLL7 270 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 M0R3E3 92 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TCF21O43680 179 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 DUSP14O95147 198 aaKnown RBP3.39□□□□□ -1.87
VPS29-212ENST00000621131 NDUFA7O95182 113 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 IGKV2D-40P01614 121 aaPredicted RBP3.39□□□□□ -1.87
VPS29-212ENST00000621131 IGLV2-8P01709 118 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TRBV12-3P01733 135 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TRGC2P03986 189 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 S100A2P29034 98 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 ZNF138P52744 262 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TCL1AP56279 114 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 NDUFA6P56556 154 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 SYNJ2BPP57105 145 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 KRTAP10-1P60331 282 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 ACTL10Q5JWF8 245 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 EBLN2Q6P2I7 272 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 UNQ9165/PRO28630Q6UXU0 137 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TCF24Q7RTU0 167 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 OR1N2Q8NGR9 330 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 MYOZ3Q8TDC0 251 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 GTSF1Q8WW33 167 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TMEM158Q8WZ71 300 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 LINC00477Q96M19 166 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 GNB1LQ9BYB4 327 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 C16orf95Q9H693 158 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 LENEPQ9Y5L5 61 aa3.39□□□□□ -1.87
VPS29-212ENST00000621131 TSSC4Q9Y5U2 329 aaPredicted RBP3.39□□□□□ -1.87
VPS29-212ENST00000621131 TRAV8-1A0A0A6YYK1 113 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 TRAV2A0A0B4J234 112 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 TRBV7-9A0A0J9YWB2 115 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 A0A1B0GUS0 222 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 C19orf71A6NCJ1 209 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 FABP5P3A8MUU1 101 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 TRGC1P0CF51 173 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 LEPP41159 167 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 AKR1D1P51857 326 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 HBBP68871 147 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H1AQ02539 215 aaPredicted RBP3.38□□□□□ -1.87
VPS29-212ENST00000621131 FABP9Q0Z7S8 132 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 MRPL54Q6P161 138 aaKnown RBP3.38□□□□□ -1.87
VPS29-212ENST00000621131 SMIM15Q7Z3B0 74 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 RNF182Q8N6D2 247 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 OR11H1Q8NG94 326 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 ZC2HC1AQ96GY0 325 aa3.38□□□□□ -1.87
VPS29-212ENST00000621131 IGKV3-7A0A075B6H7 116 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 TRAV21A0A0B4J279 112 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 A0A1B0GUT8 65 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 LOC105371267A0A1B0GV96 52 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 OR4C46A6NHA9 309 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 C2orf70A6NJV1 201 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIGD1CA8MV81 97 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 ZNF705FA8MVS1 300 aaPredicted RBP3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BKO60814 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 SH2D1AO60880 128 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 APCSP02743 223 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 ORM1P02763 201 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BJP06899 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 GPX1P07203 203 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 CRISP2P16562 243 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 CBLN1P23435 193 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BOP23527 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 TSPOP30536 169 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BBP33778 126 aa3.37□□□□□ -1.87
VPS29-212ENST00000621131 CMC4P56277 68 aaPredicted RBP3.37□□□□□ -1.87
VPS29-212ENST00000621131 HIST1H2BDP58876 126 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms