RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 CRYGDP07320 174 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 LINC00315P59091 139 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 HAMPP81172 84 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 SAPCD1Q5SSQ6 148 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 BCL2P10415 239 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 MEF2BQ02080 365 aaPredicted RBP3.87□□□□□ -1.79
CPNE3-208ENST00000614678 PARLQ9H300 379 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 MED9Q9NWA0 146 aa3.87□□□□□ -1.79
CPNE3-208ENST00000614678 GAS8-AS1O95177 125 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 ASIPP42127 132 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 RNF212Q495C1 297 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 OCC1Q8TAD7 63 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 FAM210BQ96KR6 192 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 TRAV1-1A0A0B4J248 108 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 IGHV3-30P01768 117 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 IGHV3-33P01772 117 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 IGHV3-30-3P0DP02 117 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 IGHV3-30-5P0DP03 117 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 ARL6IP6Q8N6S5 226 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 KCNS1Q96KK3 526 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 SPXQ9BT56 116 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 SCRT2Q9NQ03 307 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 ICOSQ9Y6W8 199 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 SERTM2A0A1B0GWG4 89 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 C1orf134Q5TEV5 83 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 Q6ZRN7 208 aaPredicted RBP3.86□□□□□ -1.79
CPNE3-208ENST00000614678 COX8CQ7Z4L0 72 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 IL36BQ9NZH7 164 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 ZFP30Q9Y2G7 519 aa3.86□□□□□ -1.79
CPNE3-208ENST00000614678 FBLL1A6NHQ2 334 aaKnown RBP3.85□□□□□ -1.79
CPNE3-208ENST00000614678 C11orf52Q96A22 123 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 SRIP30626 198 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 WFDC2Q14508 124 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 NEGR1Q7Z3B1 354 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 COMMD7Q86VX2 200 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 MRPS16Q9Y3D3 137 aaKnown RBP3.85□□□□□ -1.79
CPNE3-208ENST00000614678 PHLDA3Q9Y5J5 127 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 TRAV26-2A0A0B4J265 109 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 C19orf71A6NCJ1 209 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 GATCO43716 136 aaKnown RBP3.85□□□□□ -1.79
CPNE3-208ENST00000614678 PPT1P50897 306 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 FAM74A3Q4VXF1 159 aa3.85□□□□□ -1.79
CPNE3-208ENST00000614678 SIVA1O15304 175 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 EVI2AP22794 236 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 DAZ4Q86SG3 579 aaKnown RBP3.84□□□□□ -1.79
CPNE3-208ENST00000614678 C6orf223Q8N319 242 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 NUDT10Q8NFP7 164 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 LYPD6BQ8NI32 183 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 GTSF1Q8WW33 167 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 NUDT11Q96G61 164 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 NKX6-2Q9C056 277 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-208ENST00000614678 Q9HAA7 133 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 DAZ3Q9NR90 486 aaKnown RBP3.84□□□□□ -1.79
CPNE3-208ENST00000614678 TMEM238LA0A1B0GVL6 79 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 LECT2O14960 151 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 MRPL23Q16540 153 aaKnown RBP3.84□□□□□ -1.79
CPNE3-208ENST00000614678 CLRN3Q8NCR9 226 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 OR2D3Q8NGH3 330 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 GNG4P50150 75 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 LINC01620Q4KN68 170 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 MAPKAPK5-AS1Q8N8E1 139 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.84□□□□□ -1.79
CPNE3-208ENST00000614678 MANBALQ9NQG1 85 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 VAX2Q9UIW0 290 aa3.84□□□□□ -1.79
CPNE3-208ENST00000614678 MYCBP2O75592 4640 aa3.84□□□□□ -1.8
CPNE3-208ENST00000614678 H3BNG1 76 aa3.84□□□□□ -1.8
CPNE3-208ENST00000614678 EIF5AP63241 154 aaKnown RBP3.84□□□□□ -1.8
CPNE3-208ENST00000614678 LYZL1Q6UWQ5 148 aa3.84□□□□□ -1.8
CPNE3-208ENST00000614678 UPK3BQ9BT76 320 aa3.84□□□□□ -1.8
CPNE3-208ENST00000614678 KIF25-AS1Q9Y6Z4 181 aa3.84□□□□□ -1.8
CPNE3-208ENST00000614678 TRBV6-1A0A0K0K1D8 114 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 RAB5CP51148 216 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 EIF5A2Q9GZV4 153 aaKnown RBP3.83□□□□□ -1.8
CPNE3-208ENST00000614678 SRRM2Q9UQ35 2752 aaKnown RBP3.83□□□□□ -1.8
CPNE3-208ENST00000614678 LINC00694P0DN24 101 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 SPATA12Q7Z6I5 190 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 SFRP2Q96HF1 295 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 SSBP4Q9BWG4 385 aaPredicted RBP3.83□□□□□ -1.8
CPNE3-208ENST00000614678 IGLC6P0CF74 106 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 NTF3P20783 257 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 NTM-AS1Q6ZSK4 140 aa3.83□□□□□ -1.8
CPNE3-208ENST00000614678 ZNF56Q15929 161 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 OR10J3Q5JRS4 329 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 SPANXN1Q5VSR9 72 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 Q8N976 141 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 ATP6V0E2Q8NHE4 81 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 SVIPQ8NHG7 77 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 TRBV6-4A0A1B0GX49 114 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 SNAI2O43623 268 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 SRP19P09132 144 aaKnown RBP3.82□□□□□ -1.8
CPNE3-208ENST00000614678 C4orf48Q5BLP8 95 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 EIF5AL1Q6IS14 154 aaKnown RBP3.82□□□□□ -1.8
CPNE3-208ENST00000614678 NEXN-AS1Q8NBZ9 246 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 DNAH8Q96JB1 4490 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 MGPP08493 103 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 CLPSL2Q6UWE3 100 aa3.82□□□□□ -1.8
CPNE3-208ENST00000614678 F5H697 171 aa3.81□□□□□ -1.8
CPNE3-208ENST00000614678 RHOHQ15669 191 aa3.81□□□□□ -1.8
CPNE3-208ENST00000614678 DNLZQ5SXM8 178 aa3.81□□□□□ -1.8
CPNE3-208ENST00000614678 C10orf91Q5T1B1 145 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms