RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 GRIFINA4D1Z8 144 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 MAP1LC3B2A6NCE7 125 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 RHODO00212 210 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 LTAP01374 205 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 C1QBP02746 253 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 FHITP49789 147 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 TOR2AQ5JU69 321 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 FAM74A4Q5TZK3 123 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 CST9LP1Q5W188 147 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 OR11H4Q8NGC9 324 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 MAP1LC3BQ9GZQ8 125 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 PHLDA3Q9Y5J5 127 aa5.04□□□□□ -1.6
CUX1-219ENST00000606749 LECT2O14960 151 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 ARPC5O15511 151 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 TPT1P13693 172 aaKnown RBP5.03□□□□□ -1.6
CUX1-219ENST00000606749 UBE2G1P62253 170 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 NIT1Q86X76 327 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 STOML3Q8TAV4 291 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 BAALCQ8WXS3 180 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 TCEAL7Q9BRU2 100 aa5.03□□□□□ -1.6
CUX1-219ENST00000606749 VPS13BQ7Z7G8 4022 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 TMSB15BA0A087X1C1 80 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 TRBV10-1A0A0K0K1A3 114 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 M0R381 172 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 PAGE4O60829 102 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 Q6ZSA8 131 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 ZFP82Q8N141 532 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 DNAJC30Q96LL9 226 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 KLK12Q9UKR0 248 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 COX11Q9Y6N1 276 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 URGCP-MRPS24S4R325 110 aa5.02□□□□□ -1.61
CUX1-219ENST00000606749 SRRM2Q9UQ35 2752 aaKnown RBP5.01□□□□□ -1.61
CUX1-219ENST00000606749 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.01□□□□□ -1.61
CUX1-219ENST00000606749 TRBV7-3A0A075B6L6 115 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 SMLR1H3BR10 107 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 S100A9P06702 114 aaKnown RBP5.01□□□□□ -1.61
CUX1-219ENST00000606749 SEC11BP0C7V7 166 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 AKR1C3P42330 323 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 UBE2D3P61077 147 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 UBE2D2P62837 147 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 RPL36AP83881 106 aaKnown RBP5.01□□□□□ -1.61
CUX1-219ENST00000606749 RGS21Q2M5E4 152 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 KCNRGQ8N5I3 272 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 Q8N976 141 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 SFT2D1Q8WV19 159 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 MBD3L1Q8WWY6 194 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 RPL36ALQ969Q0 106 aaKnown RBP5.01□□□□□ -1.61
CUX1-219ENST00000606749 RMI2Q96E14 147 aa5.01□□□□□ -1.61
CUX1-219ENST00000606749 IGKV2D-24A0A075B6R9 120 aa5□□□□□ -1.61
CUX1-219ENST00000606749 A0A087WX48 190 aa5□□□□□ -1.61
CUX1-219ENST00000606749 RBFOX3A6NFN3 312 aa5□□□□□ -1.61
CUX1-219ENST00000606749 UMAD1C9J7I0 102 aa5□□□□□ -1.61
CUX1-219ENST00000606749 RAB4BP61018 213 aa5□□□□□ -1.61
CUX1-219ENST00000606749 ELOBQ15370 118 aa5□□□□□ -1.61
CUX1-219ENST00000606749 LINC01620Q4KN68 170 aa5□□□□□ -1.61
CUX1-219ENST00000606749 ATRAIDQ6UW56 229 aa5□□□□□ -1.61
CUX1-219ENST00000606749 BAGE2Q86Y30 109 aa5□□□□□ -1.61
CUX1-219ENST00000606749 NEXN-AS1Q8NBZ9 246 aa5□□□□□ -1.61
CUX1-219ENST00000606749 OR10G8Q8NGN5 311 aa5□□□□□ -1.61
CUX1-219ENST00000606749 CHCHD7Q9BUK0 85 aa5□□□□□ -1.61
CUX1-219ENST00000606749 MLST8Q9BVC4 326 aa5□□□□□ -1.61
CUX1-219ENST00000606749 SSBP4Q9BWG4 385 aaPredicted RBP5□□□□□ -1.61
CUX1-219ENST00000606749 FAT1Q14517 4588 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 TRBV6-8A0A0A6YYG3 113 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 A0A1B0GV50 99 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 SCO2A0A1W2PP80 73 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 HMSDA8MTL9 139 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 TMEM262E9PQX1 116 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 PLA2G1BP04054 148 aaKnown RBP4.99□□□□□ -1.61
CUX1-219ENST00000606749 CXCL1P09341 107 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 RPL19P84098 196 aaKnown RBP4.99□□□□□ -1.61
CUX1-219ENST00000606749 Q0VG73 95 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 ZNF345Q14585 488 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 PRR27Q6MZM9 219 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 KCNIP4Q6PIL6 250 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 ENHOQ6UWT2 76 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 TMUB2Q71RG4 321 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 OR10AG1Q8NH19 301 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 FAM213BQ8TBF2 198 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 UBE2WQ96B02 151 aa4.99□□□□□ -1.61
CUX1-219ENST00000606749 ZNF471Q9BX82 626 aaPredicted RBP4.99□□□□□ -1.61
CUX1-219ENST00000606749 FLG2Q5D862 2391 aaPredicted RBP4.99□□□□□ -1.61
CUX1-219ENST00000606749 A0A0D9SG52 128 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 MUC21A0A0G2JKD1 596 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 MUC21A0A140T8X8 626 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 SNAI2O43623 268 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 H2AFB1P0C5Y9 115 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 OR5AL1P0C617 328 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 LINC00528Q8N1L1 170 aa4.98□□□□□ -1.61
CUX1-219ENST00000606749 HERC1Q15751 4861 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 KANTRA0A1W2PQU2 76 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 F5H697 171 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 PFDN1O60925 122 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 SSTP61278 116 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 CCL20P78556 96 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 ZNF56Q15929 161 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 C4orf48Q5BLP8 95 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 SPANXN1Q5VSR9 72 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 NTM-AS1Q6ZSK4 140 aa4.97□□□□□ -1.61
CUX1-219ENST00000606749 SCXQ7RTU7 201 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms