RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 IGLL5B9A064 214 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 NXPH4O95158 308 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 DMRTA1Q5VZB9 504 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 WDR73Q6P4I2 378 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 RASL11AQ6T310 242 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 C16orf74Q96GX8 76 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 MRPL18Q9H0U6 180 aaKnown RBP9.02□□□□□ -0.97
UPF1-208ENST00000600012 TRAPPC1Q9Y5R8 145 aa9.02□□□□□ -0.97
UPF1-208ENST00000600012 IGHV4-4A0A075B6R2 117 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 PLAC8L1A1L4L8 177 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 TRGC2P03986 189 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 S100A8P05109 93 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 MIFP14174 115 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 FABP9Q0Z7S8 132 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 COX19Q49B96 90 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 GATD1Q8NB37 220 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 SYT8Q8NBV8 401 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 FRZBQ92765 325 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 GNB1LQ9BYB4 327 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 MRPL16Q9NX20 251 aaKnown RBP9.01□□□□□ -0.97
UPF1-208ENST00000600012 HECTD4Q9Y4D8 3996 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 DNAH6Q9C0G6 4158 aa9.01□□□□□ -0.97
UPF1-208ENST00000600012 IGHV4-28A0A0C4DH34 117 aa9□□□□□ -0.97
UPF1-208ENST00000600012 HLA-DQA1P01909 254 aa9□□□□□ -0.97
UPF1-208ENST00000600012 MT-ND6P03923 174 aa9□□□□□ -0.97
UPF1-208ENST00000600012 SLAQ13239 276 aa9□□□□□ -0.97
UPF1-208ENST00000600012 ZNF876PQ49A33 203 aa9□□□□□ -0.97
UPF1-208ENST00000600012 JPT2Q9H910 190 aa9□□□□□ -0.97
UPF1-208ENST00000600012 TRAV10A0A0B4J240 114 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 M0R2P5 195 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 TRGC1P0CF51 173 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 EVI2AP22794 236 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 EMP1P54849 157 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 KIAA1644Q3SXP7 199 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 ZNF493Q6ZR52 646 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 AMN1Q8IY45 258 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 AP1S3Q96PC3 154 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 SPXQ9BT56 116 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 TMEM191AQ9H0A3 160 aa8.99□□□□□ -0.97
UPF1-208ENST00000600012 NOP10Q9NPE3 64 aaKnown RBP8.99□□□□□ -0.97
UPF1-208ENST00000600012 VPS13DQ5THJ4 4388 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 TRGV1A0A0A0MS02 117 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 SMIM9A6NGZ8 99 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 APCSP02743 223 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 Q6ZTC4 211 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 LINC00336Q6ZUF6 198 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 SMIM15Q7Z3B0 74 aa8.98□□□□□ -0.97
UPF1-208ENST00000600012 C14orf178Q8N769 122 aaPredicted RBP8.98□□□□□ -0.97
UPF1-208ENST00000600012 TMA7Q9Y2S6 64 aaKnown RBP8.98□□□□□ -0.97
UPF1-208ENST00000600012 A0A087WWL8 130 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 C1orf196B1AJZ1 125 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 PHOX2AO14813 284 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 MGPP08493 103 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 FAM104BQ5XKR9 115 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 Q6ZTI0 123 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 PTH2Q96A98 100 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 RNF185Q96GF1 192 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 SAMD10Q9BYL1 202 aa8.97□□□□□ -0.97
UPF1-208ENST00000600012 DAZ2Q13117 558 aaKnown RBP8.96□□□□□ -0.98
UPF1-208ENST00000600012 MRPL51Q4U2R6 128 aaKnown RBP8.96□□□□□ -0.98
UPF1-208ENST00000600012 FAM74A4Q5TZK3 123 aa8.96□□□□□ -0.98
UPF1-208ENST00000600012 DPH3P1Q9H4G8 78 aa8.96□□□□□ -0.98
UPF1-208ENST00000600012 KIF25-AS1Q9Y6Z4 181 aa8.96□□□□□ -0.98
UPF1-208ENST00000600012 GAGE12BA1L429 117 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 SMKR1H3BMG3 65 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 GAGE7O76087 117 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 NCR2O95944 276 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 GAGE12FP0CL80 117 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 GAGE12GP0CL81 117 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 GAGE12IP0CL82 117 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 SMIM17P0DL12 118 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 RAB4AP20338 218 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 RASL10AQ92737 203 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 KIAA1109Q2LD37 5005 aa8.95□□□□□ -0.98
UPF1-208ENST00000600012 IGHV3-73A0A0B4J1V6 119 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 A8MWV9 139 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 GAS8-AS1O95177 125 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 CRYGDP07320 174 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 SRIP30626 198 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 PIK3CD-AS1Q5SR53 167 aa8.94□□□□□ -0.98
UPF1-208ENST00000600012 DEFB131BA0A096LNP1 70 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 TRAV26-2A0A0B4J265 109 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 D6R8Y8 96 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 RS1O15537 224 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BKO60814 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 IGHV3-53P01767 116 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BJP06899 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 P0DMU3 169 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 FAM231AP0DMU4 169 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 FAM231CP0DMU5 169 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BOP23527 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BBP33778 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BDP58876 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 LINC00315P59091 139 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 RAB5BP61020 215 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST1H2BCP62807 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 ZNF56Q15929 161 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST2H2BEQ16778 126 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 LGALS9BQ3B8N2 356 aa8.93□□□□□ -0.98
UPF1-208ENST00000600012 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms