RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 APOC2P02655 101 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 TRGC2P03986 189 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 PYYP10082 97 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 FABP4P15090 132 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 FKBP2P26885 142 aaKnown RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 CRYBB3P26998 211 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 SRP14P37108 136 aaKnown RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 TMBIM6P55061 237 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 LSM3P62310 102 aaKnown RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 HOXC5Q00444 222 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 ZNF90Q03938 601 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 HMGN3Q15651 99 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 ADIRFQ15847 76 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 KPRPQ5T749 579 aaPredicted RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 C9orf153Q5TBE3 101 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 Q6ZQT7 251 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 LYZL2Q7Z4W2 148 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 LINC00471Q8N535 108 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 PLPP5Q8NEB5 264 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 OR4X2Q8NGF9 303 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 RPS4Y2Q8TD47 263 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 TEX37Q96LM6 180 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 C2orf50Q96LR7 162 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 CARD19Q96LW7 228 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 GPX7Q96SL4 187 aaPredicted RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 WDR61Q9GZS3 305 aaKnown RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 NAA60Q9H7X0 242 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 TUBA4BQ9H853 241 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 OTORQ9NRC9 128 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 OR5V1Q9UGF6 321 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 TPRKBQ9Y3C4 175 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 CHD3Q12873 2000 aaKnown RBP1.72□□□□□ -2.13
VPS4B-203ENST00000588323 SEC16AO15027 2179 aa1.72□□□□□ -2.13
VPS4B-203ENST00000588323 ABCA1O95477 2261 aa1.71□□□□□ -2.13
VPS4B-203ENST00000588323 ROS1P08922 2347 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TRGV10A0A0A0MS01 117 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 A0A0D9SEW6 157 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 A0A0D9SG52 128 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 FAM236AA0A1B0GUQ0 79 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 FAM236BA0A1B0GV22 79 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 ODAMA1E959 279 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 FAM24AA6NFZ4 105 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF705FA8MVS1 300 aaPredicted RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 M0R233 179 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TAX1BP3O14907 124 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 RER1O15258 196 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SNCGO76070 127 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 CYB5AP00167 134 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF705BP0CI00 300 aaPredicted RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 GZMBP10144 247 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SLC25A4P12235 298 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TPT1P13693 172 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 CRYGSP22914 178 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SNCAP37840 140 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 FOXA1P55317 472 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 FOXA3P55318 350 aaPredicted RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TAS2R45P59539 299 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SNRPFP62306 86 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 DCDP81605 110 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 PLGLB1Q02325 96 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 MRPL51Q4U2R6 128 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 Q56UQ5 140 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 AADACL3Q5VUY0 350 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 C1orf140Q5VVS0 124 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 OR2T2Q6IF00 324 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SPINT4Q6UDR6 99 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 Q6ZS49 121 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 RNF182Q8N6D2 247 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 ZFAND2AQ8N6M9 145 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 OR5D16Q8NGK9 328 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TOMM6Q96B49 74 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF714Q96N38 554 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 CCL13Q99616 98 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SNRNP25Q9BV90 132 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 SEC11CQ9BY50 192 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 RPRMQ9NS64 109 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TXNL4BQ9NX01 149 aaKnown RBP1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TAAR3PQ9P1P4 343 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 UQCR10Q9UDW1 63 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 COQ4Q9Y3A0 265 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 RYR2Q92736 4967 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 TCHHQ07283 1943 aa1.71□□□□□ -2.14
VPS4B-203ENST00000588323 USF3Q68DE3 2245 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 IGKV1D-17A0A075B6S4 117 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 IGKV1D-37A0A075B6S9 117 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 IGHV1-58A0A0C4DH39 117 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 M0R129 80 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 COX7A2LO14548 114 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 GEMIN2O14893 280 aaKnown RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MRPS14O60783 128 aaKnown RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 IGHV3-53P01767 116 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 IGLC1P0CG04 106 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 RPL22P35268 128 aaKnown RBP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 INSL3P51460 131 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 TMEM258P61165 79 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 RPS11P62280 158 aaKnown RBP eCLIP1.7□□□□□ -2.14
VPS4B-203ENST00000588323 KLRD1Q13241 179 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 MOBPQ13875 183 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 ZNF141Q15928 474 aa1.7□□□□□ -2.14
VPS4B-203ENST00000588323 RRN3P1Q2M238 152 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms