RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 A0A087WWL8 130 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 SEC11BP0C7V7 166 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 AKR1C3P42330 323 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 Q5VSD8 79 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 MBD3L1Q8WWY6 194 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 PHLDA3Q9Y5J5 127 aa13.66□□□□□ -0.22
SHMT1-209ENST00000582653 IGLV5-52A0A0A0MRZ9 124 aa13.65□□□□□ -0.22
SHMT1-209ENST00000582653 M0R381 172 aa13.65□□□□□ -0.22
SHMT1-209ENST00000582653 LINC01559Q495D7 138 aa13.65□□□□□ -0.22
SHMT1-209ENST00000582653 SFRP2Q96HF1 295 aa13.65□□□□□ -0.22
SHMT1-209ENST00000582653 TCEAL7Q9BRU2 100 aa13.65□□□□□ -0.22
SHMT1-209ENST00000582653 ZNF471Q9BX82 626 aaPredicted RBP13.65□□□□□ -0.22
SHMT1-209ENST00000582653 VPS13BQ7Z7G8 4022 aa13.64□□□□□ -0.23
SHMT1-209ENST00000582653 HMSDA8MTL9 139 aa13.64□□□□□ -0.23
SHMT1-209ENST00000582653 TPT1P13693 172 aaKnown RBP13.64□□□□□ -0.23
SHMT1-209ENST00000582653 Q8N814 137 aa13.64□□□□□ -0.23
SHMT1-209ENST00000582653 SCO2A0A1W2PP80 73 aa13.63□□□□□ -0.23
SHMT1-209ENST00000582653 UMAD1C9J7I0 102 aa13.63□□□□□ -0.23
SHMT1-209ENST00000582653 RHODO00212 210 aa13.63□□□□□ -0.23
SHMT1-209ENST00000582653 SMR3BP02814 79 aaPredicted RBP13.63□□□□□ -0.23
SHMT1-209ENST00000582653 DAZ4Q86SG3 579 aaKnown RBP13.63□□□□□ -0.23
SHMT1-209ENST00000582653 DAZ3Q9NR90 486 aaKnown RBP13.63□□□□□ -0.23
SHMT1-209ENST00000582653 A0A0D9SG52 128 aa13.62□□□□□ -0.23
SHMT1-209ENST00000582653 BCL2L11O43521 198 aa13.62□□□□□ -0.23
SHMT1-209ENST00000582653 LAGE3Q14657 143 aa13.62□□□□□ -0.23
SHMT1-209ENST00000582653 TMEM70Q9BUB7 260 aa13.62□□□□□ -0.23
SHMT1-209ENST00000582653 KANTRA0A1W2PQU2 76 aa13.61□□□□□ -0.23
SHMT1-209ENST00000582653 HAMPP81172 84 aa13.61□□□□□ -0.23
SHMT1-209ENST00000582653 RPL19P84098 196 aaKnown RBP13.61□□□□□ -0.23
SHMT1-209ENST00000582653 TM2D2Q9BX73 214 aa13.61□□□□□ -0.23
SHMT1-209ENST00000582653 DNAH8Q96JB1 4490 aa13.61□□□□□ -0.23
SHMT1-209ENST00000582653 FAM229AH3BQW9 127 aa13.6□□□□□ -0.23
SHMT1-209ENST00000582653 ZFP82Q8N141 532 aa13.6□□□□□ -0.23
SHMT1-209ENST00000582653 A0A087WWC5 75 aa13.59□□□□□ -0.23
SHMT1-209ENST00000582653 H2AFB1P0C5Y9 115 aa13.59□□□□□ -0.23
SHMT1-209ENST00000582653 WFDC2Q14508 124 aa13.59□□□□□ -0.23
SHMT1-209ENST00000582653 BAGE2Q86Y30 109 aa13.59□□□□□ -0.23
SHMT1-209ENST00000582653 HERC1Q15751 4861 aa13.58□□□□□ -0.23
SHMT1-209ENST00000582653 TRAV8-3A0A0A6YYJ7 113 aa13.58□□□□□ -0.24
SHMT1-209ENST00000582653 PFDN1O60925 122 aa13.58□□□□□ -0.24
SHMT1-209ENST00000582653 S100A9P06702 114 aaKnown RBP13.58□□□□□ -0.24
SHMT1-209ENST00000582653 TMUB2Q71RG4 321 aa13.58□□□□□ -0.24
SHMT1-209ENST00000582653 MLST8Q9BVC4 326 aa13.58□□□□□ -0.24
SHMT1-209ENST00000582653 CCL20P78556 96 aa13.57□□□□□ -0.24
SHMT1-209ENST00000582653 OR10AG1Q8NH19 301 aa13.57□□□□□ -0.24
SHMT1-209ENST00000582653 DNAJC30Q96LL9 226 aa13.57□□□□□ -0.24
SHMT1-209ENST00000582653 MUC21A0A0G2JKD1 596 aa13.56□□□□□ -0.24
SHMT1-209ENST00000582653 MUC21A0A140T8X8 626 aa13.56□□□□□ -0.24
SHMT1-209ENST00000582653 LECT2O14960 151 aa13.56□□□□□ -0.24
SHMT1-209ENST00000582653 C1QBP02746 253 aa13.56□□□□□ -0.24
SHMT1-209ENST00000582653 PRR27Q6MZM9 219 aa13.56□□□□□ -0.24
SHMT1-209ENST00000582653 SSTP61278 116 aa13.55□□□□□ -0.24
SHMT1-209ENST00000582653 EIF5AP63241 154 aaKnown RBP13.55□□□□□ -0.24
SHMT1-209ENST00000582653 NIT1Q86X76 327 aa13.55□□□□□ -0.24
SHMT1-209ENST00000582653 FAM30AQ9NZY2 134 aa13.55□□□□□ -0.24
SHMT1-209ENST00000582653 TRBV10-1A0A0K0K1A3 114 aa13.54□□□□□ -0.24
SHMT1-209ENST00000582653 RPL36AP83881 106 aaKnown RBP13.54□□□□□ -0.24
SHMT1-209ENST00000582653 TOR2AQ5JU69 321 aa13.54□□□□□ -0.24
SHMT1-209ENST00000582653 RPL36ALQ969Q0 106 aaKnown RBP13.54□□□□□ -0.24
SHMT1-209ENST00000582653 URGCP-MRPS24S4R325 110 aa13.54□□□□□ -0.24
SHMT1-209ENST00000582653 SRRM2Q9UQ35 2752 aaKnown RBP13.54□□□□□ -0.24
SHMT1-209ENST00000582653 UBE2D3P61077 147 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 UBE2D2P62837 147 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 BAALCQ8WXS3 180 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 DERL1Q9BUN8 251 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 GNG13Q9P2W3 67 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 KLK12Q9UKR0 248 aa13.53□□□□□ -0.24
SHMT1-209ENST00000582653 TRBV7-3A0A075B6L6 115 aa13.52□□□□□ -0.25
SHMT1-209ENST00000582653 SNAI2O43623 268 aa13.52□□□□□ -0.25
SHMT1-209ENST00000582653 RPL35P42766 123 aaKnown RBP13.52□□□□□ -0.25
SHMT1-209ENST00000582653 RAB4BP61018 213 aa13.52□□□□□ -0.25
SHMT1-209ENST00000582653 ZNF56Q15929 161 aa13.52□□□□□ -0.25
SHMT1-209ENST00000582653 SSBP4Q9BWG4 385 aaPredicted RBP13.52□□□□□ -0.25
SHMT1-209ENST00000582653 COX11Q9Y6N1 276 aa13.52□□□□□ -0.25
SHMT1-209ENST00000582653 CXCL1P09341 107 aa13.51□□□□□ -0.25
SHMT1-209ENST00000582653 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.5□□□□□ -0.25
SHMT1-209ENST00000582653 SPANXN1Q5VSR9 72 aa13.5□□□□□ -0.25
SHMT1-209ENST00000582653 NEXN-AS1Q8NBZ9 246 aa13.5□□□□□ -0.25
SHMT1-209ENST00000582653 OR10G8Q8NGN5 311 aa13.5□□□□□ -0.25
SHMT1-209ENST00000582653 MYCBP2O75592 4640 aa13.49□□□□□ -0.25
SHMT1-209ENST00000582653 A0A087WX48 190 aa13.49□□□□□ -0.25
SHMT1-209ENST00000582653 OR5AL1P0C617 328 aa13.49□□□□□ -0.25
SHMT1-209ENST00000582653 UBE2WQ96B02 151 aa13.49□□□□□ -0.25
SHMT1-209ENST00000582653 MANBALQ9NQG1 85 aa13.49□□□□□ -0.25
SHMT1-209ENST00000582653 IGKV2D-24A0A075B6R9 120 aa13.48□□□□□ -0.25
SHMT1-209ENST00000582653 TRAV1-1A0A0B4J248 108 aa13.48□□□□□ -0.25
SHMT1-209ENST00000582653 F5H697 171 aa13.48□□□□□ -0.25
SHMT1-209ENST00000582653 C11orf52Q96A22 123 aa13.48□□□□□ -0.25
SHMT1-209ENST00000582653 TRBV6-8A0A0A6YYG3 113 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 TMEM262E9PQX1 116 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 IGLV2-8P01709 118 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 GZMBP10144 247 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 CENPWQ5EE01 88 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 Q6ZSA8 131 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 RMI2Q96E14 147 aa13.47□□□□□ -0.25
SHMT1-209ENST00000582653 RAB19A4D1S5 217 aa13.46□□□□□ -0.25
SHMT1-209ENST00000582653 LINC01620Q4KN68 170 aa13.46□□□□□ -0.25
SHMT1-209ENST00000582653 KCNIP4Q6PIL6 250 aa13.46□□□□□ -0.25
SHMT1-209ENST00000582653 KIF25-AS1Q9Y6Z4 181 aa13.46□□□□□ -0.25
SHMT1-209ENST00000582653 RBFOX3A6NFN3 312 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms