RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 LOXL1Q08397 574 aaPredicted RBP12.19□□□□□ -0.46
USP43-204ENST00000573955 CARD19Q96LW7 228 aa12.18□□□□□ -0.46
USP43-204ENST00000573955 DUX5Q96PT3 197 aa12.18□□□□□ -0.46
USP43-204ENST00000573955 TRBV6-1A0A0K0K1D8 114 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 TMEM78Q5T7P6 136 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 PRSS3P2Q8NHM4 247 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 DNAJC30Q96LL9 226 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 J3QLI3 93 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 CT83Q5H943 113 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 RBPMS2Q6ZRY4 209 aaKnown RBP12.17□□□□□ -0.46
USP43-204ENST00000573955 KRTAP1-3Q8IUG1 177 aa12.17□□□□□ -0.46
USP43-204ENST00000573955 IGKV3-7A0A075B6H7 116 aa12.16□□□□□ -0.46
USP43-204ENST00000573955 TEN1Q86WV5 123 aa12.16□□□□□ -0.46
USP43-204ENST00000573955 DLX4Q92988 240 aaPredicted RBP12.16□□□□□ -0.46
USP43-204ENST00000573955 BEX4Q9NWD9 120 aaPredicted RBP12.16□□□□□ -0.46
USP43-204ENST00000573955 PRR25Q96S07 402 aa12.16□□□□□ -0.46
USP43-204ENST00000573955 TRBV25-1A0A075B6N4 114 aa12.15□□□□□ -0.46
USP43-204ENST00000573955 SH2D1AO60880 128 aa12.15□□□□□ -0.46
USP43-204ENST00000573955 EVI2AP22794 236 aa12.15□□□□□ -0.46
USP43-204ENST00000573955 ZNF80P51504 273 aaPredicted RBP12.15□□□□□ -0.46
USP43-204ENST00000573955 USMG5Q96IX5 58 aa12.15□□□□□ -0.46
USP43-204ENST00000573955 IGLV1-40P01703 118 aa12.14□□□□□ -0.47
USP43-204ENST00000573955 ARMS2P0C7Q2 107 aa12.14□□□□□ -0.47
USP43-204ENST00000573955 TRAV8-2A0A0B4J237 113 aa12.14□□□□□ -0.47
USP43-204ENST00000573955 RPL11P62913 178 aaKnown RBP12.14□□□□□ -0.47
USP43-204ENST00000573955 Q6Q795 121 aa12.14□□□□□ -0.47
USP43-204ENST00000573955 GFRA4Q9GZZ7 299 aa12.14□□□□□ -0.47
USP43-204ENST00000573955 TRAV4A0A0B4J268 109 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 EDN2P20800 178 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 PSMG4Q5JS54 123 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 U3KQE9 123 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 HOXA3O43365 443 aaPredicted RBP12.13□□□□□ -0.47
USP43-204ENST00000573955 C16orf92Q96LL3 132 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 TTTY13Q9BZ97 58 aa12.13□□□□□ -0.47
USP43-204ENST00000573955 H3BUA1 57 aa12.12□□□□□ -0.47
USP43-204ENST00000573955 NDUFA4O00483 81 aa12.12□□□□□ -0.47
USP43-204ENST00000573955 CFHR3Q02985 330 aa12.12□□□□□ -0.47
USP43-204ENST00000573955 SLC50A1Q9BRV3 221 aa12.12□□□□□ -0.47
USP43-204ENST00000573955 DEFB1P60022 68 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 TMEM190Q8WZ59 177 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 IGKV2D-26A0A0A0MRZ7 120 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 TAL2Q16559 108 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 LRRC75A-AS1Q8N1F1 130 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 RASL10AQ92737 203 aa12.11□□□□□ -0.47
USP43-204ENST00000573955 LINC00694P0DN24 101 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 C3orf56Q8N813 242 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 MDFICQ9P1T7 246 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 OTOGQ6ZRI0 2925 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 A0A096LNJ9 63 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 A0A1B0GUT8 65 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 FSHBP01225 129 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 ASIPP42127 132 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 PSMB2P49721 201 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 Q6YL49 198 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 C20orf173Q96LM9 149 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 AGPAT4-IT1Q9H0P7 198 aa12.1□□□□□ -0.47
USP43-204ENST00000573955 ORM1P02763 201 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 HIST2H2BDQ6DRA6 164 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 LYZL1Q6UWQ5 148 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 OR10J6PQ8NGY7 276 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 PSMB8P28062 276 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 IFI27L1Q96BM0 104 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 DKK2Q9UBU2 259 aa12.09□□□□□ -0.47
USP43-204ENST00000573955 LOC107984640A0A0U1RRK4 108 aa12.08□□□□□ -0.47
USP43-204ENST00000573955 CRLF1O75462 422 aa12.08□□□□□ -0.47
USP43-204ENST00000573955 FCER1GP30273 86 aa12.08□□□□□ -0.47
USP43-204ENST00000573955 GPHB5Q86YW7 130 aa12.08□□□□□ -0.47
USP43-204ENST00000573955 TMEM213A2RRL7 107 aa12.08□□□□□ -0.48
USP43-204ENST00000573955 HAX1O00165 279 aa12.08□□□□□ -0.48
USP43-204ENST00000573955 FAM106AQ4KMX7 169 aa12.08□□□□□ -0.48
USP43-204ENST00000573955 HIST1H4GQ99525 98 aa12.08□□□□□ -0.48
USP43-204ENST00000573955 RHPN1-AS1Q9BWJ2 59 aa12.08□□□□□ -0.48
USP43-204ENST00000573955 IFI27P40305 119 aaPredicted RBP12.07□□□□□ -0.48
USP43-204ENST00000573955 Q6ZQT7 251 aa12.07□□□□□ -0.48
USP43-204ENST00000573955 A8MWV9 139 aa12.07□□□□□ -0.48
USP43-204ENST00000573955 FAM19A5Q7Z5A7 132 aaPredicted RBP12.07□□□□□ -0.48
USP43-204ENST00000573955 RIGQ13278 110 aa12.07□□□□□ -0.48
USP43-204ENST00000573955 LINC01587Q99440 93 aa12.07□□□□□ -0.48
USP43-204ENST00000573955 HBDP02042 147 aa12.06□□□□□ -0.48
USP43-204ENST00000573955 ZNF702PQ9H963 129 aa12.06□□□□□ -0.48
USP43-204ENST00000573955 DAZ1Q9NQZ3 744 aaKnown RBP12.06□□□□□ -0.48
USP43-204ENST00000573955 MORN3Q6PF18 240 aaPredicted RBP12.06□□□□□ -0.48
USP43-204ENST00000573955 TMEM158Q8WZ71 300 aa12.06□□□□□ -0.48
USP43-204ENST00000573955 IGHV7-4-1A0A0J9YVY3 117 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 F6UB75 175 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 WFDC3Q8IUB2 231 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 SMR3AQ99954 134 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 LOC107984156A0A0G2JMH3 177 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 LOC389332A0A1B0GUA5 103 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 RBAKDNA6NC62 111 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 J3KT08 172 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 C9orf139Q6ZV77 190 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 COX8CQ7Z4L0 72 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 ARL17AQ8IVW1 177 aa12.05□□□□□ -0.48
USP43-204ENST00000573955 ANKRD29Q8N6D5 301 aa12.04□□□□□ -0.48
USP43-204ENST00000573955 OR13C6PQ8NH95 151 aa12.04□□□□□ -0.48
USP43-204ENST00000573955 C9JAW5 83 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 H3BVH4 76 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 FXYD7P58549 80 aa12.03□□□□□ -0.48
USP43-204ENST00000573955 MRPL23Q16540 153 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms