RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IGKV3-20P01619 116 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 TP53TG1Q9Y2A0 90 aa16.93■□□□□ 0.3
VPS53-211ENST00000571805 J3QLI3 93 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 VCYO14598 125 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 SYNJ2BPP57105 145 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 C12orf74Q32Q52 190 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 VPS25Q9BRG1 176 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 PRADC1Q9BSG0 188 aa16.92■□□□□ 0.3
VPS53-211ENST00000571805 F5H697 171 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 TGFAP01135 160 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 LGALS1P09382 135 aaKnown RBP16.91■□□□□ 0.3
VPS53-211ENST00000571805 MAPK1IP1LQ8NDC0 245 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 DEFB104AQ8WTQ1 72 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 ZANQ9Y493 2812 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 IGLL5B9A064 214 aa16.91■□□□□ 0.3
VPS53-211ENST00000571805 MYO18BQ8IUG5 2567 aa16.9■□□□□ 0.3
VPS53-211ENST00000571805 TRBV6-5A0A0K0K1A5 114 aa16.9■□□□□ 0.3
VPS53-211ENST00000571805 SDHAF1A6NFY7 115 aa16.9■□□□□ 0.3
VPS53-211ENST00000571805 LINC01549A6NIU2 74 aa16.9■□□□□ 0.3
VPS53-211ENST00000571805 Q8N1Y9 231 aa16.9■□□□□ 0.3
VPS53-211ENST00000571805 USP9YO00507 2555 aaPredicted RBP16.9■□□□□ 0.3
VPS53-211ENST00000571805 IGLV4-69A0A075B6H9 119 aa16.89■□□□□ 0.3
VPS53-211ENST00000571805 TRBV27A0A0K0K1C4 114 aa16.89■□□□□ 0.3
VPS53-211ENST00000571805 RPL39P62891 51 aaKnown RBP16.89■□□□□ 0.29
VPS53-211ENST00000571805 KIR2DL4Q99706 377 aa16.89■□□□□ 0.29
VPS53-211ENST00000571805 ANKRD17O75179 2603 aaKnown RBP16.88■□□□□ 0.29
VPS53-211ENST00000571805 COX6B1P14854 86 aa16.88■□□□□ 0.29
VPS53-211ENST00000571805 VPREB3Q9UKI3 123 aa16.88■□□□□ 0.29
VPS53-211ENST00000571805 FBN2P35556 2912 aa16.88■□□□□ 0.29
VPS53-211ENST00000571805 RIPPLY3P57055 190 aa16.88■□□□□ 0.29
VPS53-211ENST00000571805 SPINK13Q1W4C9 94 aa16.88■□□□□ 0.29
VPS53-211ENST00000571805 MORN3Q6PF18 240 aaPredicted RBP16.88■□□□□ 0.29
VPS53-211ENST00000571805 IGHV1OR15-1A0A075B7D0 117 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 C11orf86A6NJI1 115 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 FAM74A4Q5TZK3 123 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 A0A1B0GWB2 263 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 ELANEP08246 267 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 PMVKQ15126 192 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 TMEM141Q96I45 108 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 DUX5Q96PT3 197 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 ZNF702PQ9H963 129 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 DOPEY2Q9Y3R5 2298 aa16.87■□□□□ 0.29
VPS53-211ENST00000571805 M0QY20 66 aa16.86■□□□□ 0.29
VPS53-211ENST00000571805 FSHBP01225 129 aa16.86■□□□□ 0.29
VPS53-211ENST00000571805 SYT8Q8NBV8 401 aa16.86■□□□□ 0.29
VPS53-211ENST00000571805 TIMM17AQ99595 171 aa16.86■□□□□ 0.29
VPS53-211ENST00000571805 HOXD3P31249 432 aaPredicted RBP16.86■□□□□ 0.29
VPS53-211ENST00000571805 G3V4G9 280 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 AMTNQ6UX39 209 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 Q6YL49 198 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 RNF152Q8N8N0 203 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 UBE2E2Q96LR5 201 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 ZNF815PA8K554 130 aa16.85■□□□□ 0.29
VPS53-211ENST00000571805 MXRA5Q9NR99 2828 aa16.84■□□□□ 0.29
VPS53-211ENST00000571805 CD300EQ496F6 205 aaPredicted RBP16.84■□□□□ 0.29
VPS53-211ENST00000571805 PAPPA-AS1Q5QFB9 102 aa16.84■□□□□ 0.29
VPS53-211ENST00000571805 FOXI2Q6ZQN5 318 aa16.84■□□□□ 0.29
VPS53-211ENST00000571805 ZNF479Q96JC4 524 aa16.84■□□□□ 0.29
VPS53-211ENST00000571805 EMP1P54849 157 aa16.84■□□□□ 0.29
VPS53-211ENST00000571805 SORL1Q92673 2214 aa16.83■□□□□ 0.28
VPS53-211ENST00000571805 PLEKHB2Q96CS7 222 aa16.83■□□□□ 0.28
VPS53-211ENST00000571805 ZNF56Q15929 161 aa16.82■□□□□ 0.28
VPS53-211ENST00000571805 KLHL30-AS1Q8NEE0 82 aa16.82■□□□□ 0.28
VPS53-211ENST00000571805 ZNF256Q9Y2P7 627 aaPredicted RBP16.82■□□□□ 0.28
VPS53-211ENST00000571805 POLQO75417 2590 aa16.82■□□□□ 0.28
VPS53-211ENST00000571805 RRN3P1Q2M238 152 aa16.81■□□□□ 0.28
VPS53-211ENST00000571805 SCGB2A2Q13296 93 aa16.8■□□□□ 0.28
VPS53-211ENST00000571805 ZNF876PQ49A33 203 aa16.8■□□□□ 0.28
VPS53-211ENST00000571805 PRB1P04280 392 aa16.8■□□□□ 0.28
VPS53-211ENST00000571805 TRPT1Q86TN4 253 aaKnown RBP16.8■□□□□ 0.28
VPS53-211ENST00000571805 ZNRF2Q8NHG8 242 aa16.8■□□□□ 0.28
VPS53-211ENST00000571805 ACACBO00763 2458 aa16.79■□□□□ 0.28
VPS53-211ENST00000571805 IGHV4-31P0DP07 118 aa16.79■□□□□ 0.28
VPS53-211ENST00000571805 NSUN5P1Q3KNT7 163 aa16.79■□□□□ 0.28
VPS53-211ENST00000571805 TCTEX1D4Q5JR98 221 aa16.79■□□□□ 0.28
VPS53-211ENST00000571805 BEX4Q9NWD9 120 aaPredicted RBP16.79■□□□□ 0.28
VPS53-211ENST00000571805 HOXA3O43365 443 aaPredicted RBP16.79■□□□□ 0.28
VPS53-211ENST00000571805 SCGB1D4Q6XE38 83 aa16.79■□□□□ 0.28
VPS53-211ENST00000571805 RBMY1A1P0DJD3 496 aaKnown RBP16.78■□□□□ 0.28
VPS53-211ENST00000571805 RBMY1CP0DJD4 496 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 P0DMU3 169 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 FAM231AP0DMU4 169 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 FAM231CP0DMU5 169 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 HERVK_113P61574 105 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 RBMY1FQ15415 496 aaKnown RBP16.78■□□□□ 0.28
VPS53-211ENST00000571805 RHOHQ15669 191 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 CR1P17927 2039 aa16.78■□□□□ 0.28
VPS53-211ENST00000571805 CENPEQ02224 2701 aa16.77■□□□□ 0.28
VPS53-211ENST00000571805 TRGV11A0A075B6L2 103 aa16.77■□□□□ 0.27
VPS53-211ENST00000571805 C18orf65Q6ZTR6 163 aa16.77■□□□□ 0.27
VPS53-211ENST00000571805 SLURP1P55000 103 aa16.75■□□□□ 0.27
VPS53-211ENST00000571805 TSPEAR-AS2P59090 65 aa16.75■□□□□ 0.27
VPS53-211ENST00000571805 A0A0J9YY99 117 aa16.75■□□□□ 0.27
VPS53-211ENST00000571805 KNCNA6PVL3 124 aa16.75■□□□□ 0.27
VPS53-211ENST00000571805 OPRPNQ99935 248 aaPredicted RBP16.75■□□□□ 0.27
VPS53-211ENST00000571805 H3BMG7 143 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 DEFB136Q30KP8 78 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 TMEM170BQ5T4T1 132 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 F8W1H4 67 aa16.74■□□□□ 0.27
VPS53-211ENST00000571805 UBE2D1P51668 147 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms