RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 NUDT10Q8NFP7 164 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 RNASE8Q8TDE3 154 aaKnown RBP7.81□□□□□ -1.16
CDH3-208ENST00000569036 NUDT11Q96G61 164 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 PAXXQ9BUH6 204 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 MAP1LC3CQ9BXW4 147 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 Q9H8V8 135 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 RNF24Q9Y225 148 aa7.81□□□□□ -1.16
CDH3-208ENST00000569036 TEX48A0A1B0GUV7 120 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 TMEM189A5PLL7 270 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 KNCNA6PVL3 124 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 NPIPB6E9PJ23 425 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 CORTO00230 105 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 LEPROTL1O95214 131 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 TCL1AP56279 114 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 VAMP3Q15836 100 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 Q56UQ5 140 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 BVES-AS1Q5T3Y7 98 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 RNASEKQ6P5S7 137 aaKnown RBP7.8□□□□□ -1.16
CDH3-208ENST00000569036 Q6ZRN7 208 aaPredicted RBP7.8□□□□□ -1.16
CDH3-208ENST00000569036 C5orf17Q8NAS9 161 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 MLST8Q9BVC4 326 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 NDUFA4L2Q9NRX3 87 aa7.8□□□□□ -1.16
CDH3-208ENST00000569036 FAT4Q6V0I7 4981 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 DNAH8Q96JB1 4490 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 TRAV3A0A0B4J244 114 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 TEX50A0A1B0GTY4 177 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 HIGD1CA8MV81 97 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 SIVA1O15304 175 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 FOXA3P55318 350 aaPredicted RBP7.79□□□□□ -1.16
CDH3-208ENST00000569036 PLP1P60201 277 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 KIAA1644Q3SXP7 199 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 LINC01559Q495D7 138 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 GTF2H5Q6ZYL4 71 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 FAM19A2Q8N3H0 131 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 TMEM167AQ8TBQ9 72 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 ZNF414Q96IQ9 312 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 EPDR1Q9UM22 224 aa7.79□□□□□ -1.16
CDH3-208ENST00000569036 TNXBP22105 4242 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 IGKV1OR2-108A0A075B7D4 117 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 IGHV3OR16-13A0A075B7E8 117 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 IGHV3-74A0A0B4J1X5 117 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 C19orf71A6NCJ1 209 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 TAX1BP3O14907 124 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 NUDT3O95989 172 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 LTAP01374 205 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 P01737 135 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 ASIPP42127 132 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 CSN1S1P47710 185 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 RPL8P62917 257 aaKnown RBP7.78□□□□□ -1.16
CDH3-208ENST00000569036 OCIAD2Q56VL3 154 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 LINC01545Q5VT33 79 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 C16orf54Q6UWD8 224 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 FXYD5Q96DB9 178 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 TRGV9Q99603 122 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 CST9LQ9H4G1 147 aa7.78□□□□□ -1.16
CDH3-208ENST00000569036 TRAV2A0A0B4J234 112 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 IGHV1-24A0A0C4DH33 117 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 A6NDN8 102 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 FBLL1A6NHQ2 334 aaKnown RBP7.77□□□□□ -1.17
CDH3-208ENST00000569036 COX8AP10176 69 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 GCSHP23434 173 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 LINC00315P59091 139 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 S100A7AQ86SG5 101 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 VKORC1L1Q8N0U8 176 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 DAZAP1Q96EP5 407 aaKnown RBP7.77□□□□□ -1.17
CDH3-208ENST00000569036 TMEM14CQ9P0S9 112 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 XCL2Q9UBD3 114 aa7.77□□□□□ -1.17
CDH3-208ENST00000569036 TRAV34A0A0B4J273 112 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 CGB1A6NKQ9 187 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 RIGQ13278 110 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 C21orf62-AS1Q17RA5 79 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 GDF5OSQ5U4N7 250 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 PRR27Q6MZM9 219 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 OR10AG1Q8NH19 301 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 C1QTNF4Q9BXJ3 329 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 OTORQ9NRC9 128 aa7.76□□□□□ -1.17
CDH3-208ENST00000569036 SERTM2A0A1B0GWG4 89 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 SMIM9A6NGZ8 99 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 SPINK4O60575 86 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 SLC25A5P05141 298 aaKnown RBP7.75□□□□□ -1.17
CDH3-208ENST00000569036 DNAH10OSP0CZ25 163 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 SMIM17P0DL12 118 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 CT45A10P0DMU9 189 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 DAD1P61803 113 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 MPV17L2Q567V2 206 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 BPIFA4PQ86YQ2 179 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 LINC00528Q8N1L1 170 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 OR5A1Q8NGJ0 315 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 URB1-AS1Q96HZ7 61 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 HINT2Q9BX68 163 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 FNDC4Q9H6D8 234 aaPredicted RBP7.75□□□□□ -1.17
CDH3-208ENST00000569036 THYN1Q9P016 225 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 RABAC1Q9UI14 185 aa7.75□□□□□ -1.17
CDH3-208ENST00000569036 H3BRM9 83 aa7.74□□□□□ -1.17
CDH3-208ENST00000569036 ZNF688P0C7X2 276 aa7.74□□□□□ -1.17
CDH3-208ENST00000569036 HSD52Q0P140 79 aa7.74□□□□□ -1.17
CDH3-208ENST00000569036 VPS25Q9BRG1 176 aa7.74□□□□□ -1.17
CDH3-208ENST00000569036 IGHV3-21A0A0B4J1V1 117 aa7.73□□□□□ -1.17
CDH3-208ENST00000569036 K7EQM0 130 aa7.73□□□□□ -1.17
CDH3-208ENST00000569036 TCRAP04437 139 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms