RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	FMC1	Q96HJ9	113 aa		11.14	□□□□□ -0.63
CLN3-231	ENST00000568422	TCEAL7	Q9BRU2	100 aa		11.14	□□□□□ -0.63
CLN3-231	ENST00000568422		Q9UF83	564 aa		11.14	□□□□□ -0.63
CLN3-231	ENST00000568422	CRIP1	P50238	77 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422	AKR1C8P	Q5T2L2	129 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422		Q6ZNX1	250 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422	ZC2HC1A	Q96GY0	325 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422	SFRP2	Q96HF1	295 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422	PHLDA3	Q9Y5J5	127 aa		11.13	□□□□□ -0.63
CLN3-231	ENST00000568422	FXYD6-FXYD2	A0A087WZ82	144 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422		M0R036	132 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	SH2D1A	O60880	128 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	UBE2G1	P62253	170 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	FAM74A4	Q5TZK3	123 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	NIT1	Q86X76	327 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422		Q8N976	141 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	CHCHD7	Q9BUK0	85 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	DNAH8	Q96JB1	4490 aa		11.12	□□□□□ -0.63
CLN3-231	ENST00000568422	TRBV10-1	A0A0K0K1A3	114 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	TRBV6-1	A0A0K0K1D8	114 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	LECT2	O14960	151 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	TPT1	P13693	172 aa	Known RBP	11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	ELOB	Q15370	118 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	ZNF674	Q2M3X9	581 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	BAALC	Q8WXS3	180 aa		11.11	□□□□□ -0.63
CLN3-231	ENST00000568422	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.1	□□□□□ -0.63
CLN3-231	ENST00000568422	GRIFIN	A4D1Z8	144 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422		J3QL48	77 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422	FHIT	P49789	147 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422	LINC01559	Q495D7	138 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422	KCNIP4	Q6PIL6	250 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422	ZFP82	Q8N141	532 aa		11.1	□□□□□ -0.63
CLN3-231	ENST00000568422		A0A087WWL8	130 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422		A0A087WX48	190 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	MAP1LC3B2	A6NCE7	125 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	LTA	P01374	205 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	RPL36A	P83881	106 aa	Known RBP	11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	STOML3	Q8TAV4	291 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	RPL36AL	Q969Q0	106 aa	Known RBP	11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	MAP1LC3B	Q9GZQ8	125 aa		11.09	□□□□□ -0.63
CLN3-231	ENST00000568422	TRBV7-3	A0A075B6L6	115 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422	IGKV2D-24	A0A075B6R9	120 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422	RBFOX3	A6NFN3	312 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422		M0R381	172 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422		Q0VG73	95 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422	LINC00528	Q8N1L1	170 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422	KLK12	Q9UKR0	248 aa		11.08	□□□□□ -0.64
CLN3-231	ENST00000568422	ATRAID	Q6UW56	229 aa		11.07	□□□□□ -0.64
CLN3-231	ENST00000568422	DEFB104A	Q8WTQ1	72 aa		11.07	□□□□□ -0.64
CLN3-231	ENST00000568422		A0A1B0GVG6	124 aa		11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	S100A9	P06702	114 aa	Known RBP	11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	UBE2D3	P61077	147 aa		11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	UBE2D2	P62837	147 aa		11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	CST9LP1	Q5W188	147 aa		11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	UBE2W	Q96B02	151 aa		11.06	□□□□□ -0.64
CLN3-231	ENST00000568422	TMSB15B	A0A087X1C1	80 aa		11.05	□□□□□ -0.64
CLN3-231	ENST00000568422	AKR1C3	P42330	323 aa		11.05	□□□□□ -0.64
CLN3-231	ENST00000568422	RAB4B	P61018	213 aa		11.05	□□□□□ -0.64
CLN3-231	ENST00000568422	OR10G8	Q8NGN5	311 aa		11.05	□□□□□ -0.64
CLN3-231	ENST00000568422	CYTL1	Q9NRR1	136 aa		11.05	□□□□□ -0.64
CLN3-231	ENST00000568422	KRTAP29-1	A8MX34	341 aa	Predicted RBP	11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	CXCL1	P09341	107 aa		11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	C14orf177	Q52M58	125 aa		11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	SCX	Q7RTU7	201 aa		11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	DNAJC30	Q96LL9	226 aa		11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	CHAC1	Q9BUX1	264 aa		11.04	□□□□□ -0.64
CLN3-231	ENST00000568422	TRBV6-8	A0A0A6YYG3	113 aa		11.03	□□□□□ -0.64
CLN3-231	ENST00000568422		G3V3Q6	166 aa		11.03	□□□□□ -0.64
CLN3-231	ENST00000568422	ARPC5	O15511	151 aa		11.03	□□□□□ -0.64
CLN3-231	ENST00000568422	LINC01620	Q4KN68	170 aa		11.03	□□□□□ -0.64
CLN3-231	ENST00000568422	TMEM262	E9PQX1	116 aa		11.02	□□□□□ -0.65
CLN3-231	ENST00000568422	PAGE4	O60829	102 aa		11.02	□□□□□ -0.65
CLN3-231	ENST00000568422	PKIA	P61925	76 aa		11.02	□□□□□ -0.65
CLN3-231	ENST00000568422	C1orf43	Q9BWL3	253 aa		11.02	□□□□□ -0.65
CLN3-231	ENST00000568422	ZNF471	Q9BX82	626 aa	Predicted RBP	11.02	□□□□□ -0.65
CLN3-231	ENST00000568422	PRR27	Q6MZM9	219 aa		11.01	□□□□□ -0.65
CLN3-231	ENST00000568422	hCG_2014768	A0A024R1R8	64 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	UMAD1	C9J7I0	102 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	CRP	P02741	224 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	ZNF56	Q15929	161 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	TMEM97	Q5BJF2	176 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	SFT2D1	Q8WV19	159 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	MLST8	Q9BVC4	326 aa		11	□□□□□ -0.65
CLN3-231	ENST00000568422	SSBP4	Q9BWG4	385 aa	Predicted RBP	11	□□□□□ -0.65
CLN3-231	ENST00000568422	SNAI2	O43623	268 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	PFDN1	O60925	122 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	ZNF345	Q14585	488 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	ENHO	Q6UWT2	76 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	BAGE2	Q86Y30	109 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	NEXN-AS1	Q8NBZ9	246 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	OR10AG1	Q8NH19	301 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	CIRBP-AS1	Q8TBR5	109 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	MBD3L1	Q8WWY6	194 aa		10.99	□□□□□ -0.65
CLN3-231	ENST00000568422	OR5AL1	P0C617	328 aa		10.98	□□□□□ -0.65
CLN3-231	ENST00000568422	SPANXN1	Q5VSR9	72 aa		10.98	□□□□□ -0.65
CLN3-231	ENST00000568422	C15orf54	Q8N8G6	183 aa		10.98	□□□□□ -0.65
CLN3-231	ENST00000568422	IGLV2-8	P01709	118 aa		10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	ANG	P03950	147 aa	Known RBP	10.97	□□□□□ -0.65
CLN3-231	ENST00000568422	RPL19	P84098	196 aa	Known RBP	10.97	□□□□□ -0.65

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