RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 RPRMLQ8N4K4 120 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 TMEM141Q96I45 108 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 CYP4F30PQ9H0H9 118 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 TIMM9Q9Y5J7 89 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 GREB1Q4ZG55 1949 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 LRRK1Q38SD2 2015 aa3.59□□□□□ -1.83
VPS35-205ENST00000563984 A0A0C4DFX4 3053 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 IGHV3-20A0A0C4DH32 117 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 IGHV4-61A0A0C4DH41 118 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 TEX49A0A1B0GTD5 131 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 CTXND1A0A1B0GTU2 59 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 C3orf84H3BNL1 204 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 IGHV4-59P01825 116 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 ADAMTSL4-AS1Q5T5F5 129 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 ATP5EP2Q5VTU8 51 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 CLECL1Q8IZS7 167 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 TMEM61Q8N0U2 210 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 XAGE1AQ9HD64 81 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 SMAD5-AS1Q9Y6J3 95 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 PLXNB3Q9ULL4 1909 aa3.58□□□□□ -1.84
VPS35-205ENST00000563984 SNRNP200O75643 2136 aaKnown RBP3.58□□□□□ -1.84
VPS35-205ENST00000563984 IGKV1-12A0A0C4DH73 117 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 SMIM27A0A1W2PRY6 76 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 NDUFAF8A1L188 74 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 C17orf51A8MQB3 221 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 IGKV1D-12P01611 117 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 DYNLT1P63172 113 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 SYCNQ0VAF6 134 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 UBR3Q6ZT12 1888 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 SCGB3A1Q96QR1 104 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 PRO1854Q9UHT4 67 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 NDUFA12Q9UI09 145 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 CELA1Q9UNI1 258 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 PHLDA3Q9Y5J5 127 aa3.57□□□□□ -1.84
VPS35-205ENST00000563984 DOCK11Q5JSL3 2073 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 CD163L1Q9NR16 1453 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 IGHV4-4A0A075B6R2 117 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 IGKV6D-21A0A0A0MT36 114 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 TMEM30CPA0ZSE6 113 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 FAM223BA6NKX1 122 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 KRTAP16-1A8MUX0 517 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 C11orf94C9JXX5 98 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 J3QRE1 110 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 K7EQD1 137 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 GNRH2O43555 120 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 IGHV3-48P01763 117 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 IFI6P09912 130 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 RPL27AP46776 148 aaKnown RBP3.56□□□□□ -1.84
VPS35-205ENST00000563984 CXCL17Q6UXB2 119 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 ZNF826PQ6ZT77 177 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 SND1-IT1Q9HBX3 110 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 CCL28Q9NRJ3 127 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 V9GYV3 84 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 PLXNA3P51805 1871 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 KIAA1549LQ6ZVL6 1849 aa3.56□□□□□ -1.84
VPS35-205ENST00000563984 CUL9Q8IWT3 2517 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 THSD7BQ9C0I4 1608 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 PCNX3Q9H6A9 2034 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 THADAQ6YHU6 1953 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 A0A087WW49 117 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 IGLV3-32A0A0A0MS00 114 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 IGHV7-81A0A0B4J1V7 117 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 IGHV5-51A0A0C4DH38 117 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 A0A0J9YWU9 116 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 TRBV10-3A0A0K0K1G6 114 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 F8WEM9 126 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 ZNF22P17026 224 aaPredicted RBP3.55□□□□□ -1.84
VPS35-205ENST00000563984 FCER1GP30273 86 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 FXYD6P3P58550 94 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 KRTAP10-3P60369 221 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 ZNF818PQ6ZRF7 136 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 ORMDL3Q8N138 153 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 DEFB123Q8N688 67 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 FLVCR1-AS1Q8TAF5 88 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 ZNF414Q96IQ9 312 aa3.55□□□□□ -1.84
VPS35-205ENST00000563984 PTPRSQ13332 1948 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 BAZ2BQ9UIF8 2168 aaKnown RBP3.54□□□□□ -1.84
VPS35-205ENST00000563984 IGLV3-9A0A075B6K5 115 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 IGKV6-21A0A0C4DH24 114 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 IGHV3-16A0A0C4DH30 117 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 TMEM223A0PJW6 202 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 H7C423 109 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 SH2D1AO60880 128 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 BGLAPP02818 100 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 IGHV4-34P06331 123 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 COX6CP09669 75 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 MIFP14174 115 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 GTF3C1Q12789 2109 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 CCL14Q16627 93 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 PROK2Q9HC23 129 aa3.54□□□□□ -1.84
VPS35-205ENST00000563984 SHROOM3Q8TF72 1996 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 LCTP09848 1927 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 IGHV3-72A0A0B4J1Y9 119 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 HCG22E2RYF7 251 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 ERC2-IT1O76042 136 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 WISP3O95389 354 aaPredicted RBP3.53□□□□□ -1.84
VPS35-205ENST00000563984 COX7A1P24310 79 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 S100A3P33764 101 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 FXYD7P58549 80 aa3.53□□□□□ -1.84
VPS35-205ENST00000563984 SUPT4H1P63272 117 aaKnown RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms