RNA–Protein interactions for RNA: ENST00000563410.1

CHD9-208, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 488 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-208	ENST00000563410	BAALC	Q8WXS3	180 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	DNAJC30	Q96LL9	226 aa		13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	NKX6-2	Q9C056	277 aa	Predicted RBP	13.8	□□□□□ -0.2
CHD9-208	ENST00000563410	FAM74A4	Q5TZK3	123 aa		13.79	□□□□□ -0.2
CHD9-208	ENST00000563410	OR11H4	Q8NGC9	324 aa		13.79	□□□□□ -0.2
CHD9-208	ENST00000563410	SFRP2	Q96HF1	295 aa		13.79	□□□□□ -0.2
CHD9-208	ENST00000563410	ZFP30	Q9Y2G7	519 aa		13.79	□□□□□ -0.2
CHD9-208	ENST00000563410		A0A087WWL8	130 aa		13.78	□□□□□ -0.2
CHD9-208	ENST00000563410	COX11	Q9Y6N1	276 aa		13.78	□□□□□ -0.2
CHD9-208	ENST00000563410		G3V3Q6	166 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	ZNF674	Q2M3X9	581 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	LINC01620	Q4KN68	170 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	AKR1C8P	Q5T2L2	129 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	FAM162B	Q5T6X4	162 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	LINC00528	Q8N1L1	170 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	FMC1	Q96HJ9	113 aa		13.77	□□□□□ -0.21
CHD9-208	ENST00000563410	LINC01559	Q495D7	138 aa		13.76	□□□□□ -0.21
CHD9-208	ENST00000563410	KLK12	Q9UKR0	248 aa		13.76	□□□□□ -0.21
CHD9-208	ENST00000563410	PHLDA3	Q9Y5J5	127 aa		13.76	□□□□□ -0.21
CHD9-208	ENST00000563410	TMSB15B	A0A087X1C1	80 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	TRBV6-1	A0A0K0K1D8	114 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	MAP1LC3B2	A6NCE7	125 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	PLA2G1B	P04054	148 aa	Known RBP	13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	TPT1	P13693	172 aa	Known RBP	13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	UBE2G1	P62253	170 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	MAP1LC3B	Q9GZQ8	125 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	BATF3	Q9NR55	127 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	URGCP-MRPS24	S4R325	110 aa		13.75	□□□□□ -0.21
CHD9-208	ENST00000563410	IGKV2D-24	A0A075B6R9	120 aa		13.74	□□□□□ -0.21
CHD9-208	ENST00000563410		M0R381	172 aa		13.74	□□□□□ -0.21
CHD9-208	ENST00000563410	LTA	P01374	205 aa		13.74	□□□□□ -0.21
CHD9-208	ENST00000563410	RMI2	Q96E14	147 aa		13.74	□□□□□ -0.21
CHD9-208	ENST00000563410	CYTL1	Q9NRR1	136 aa		13.74	□□□□□ -0.21
CHD9-208	ENST00000563410		Q8N976	141 aa		13.73	□□□□□ -0.21
CHD9-208	ENST00000563410	CHCHD7	Q9BUK0	85 aa		13.73	□□□□□ -0.21
CHD9-208	ENST00000563410	TRBV10-1	A0A0K0K1A3	114 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410		J3QL48	77 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	SEC11B	P0C7V7	166 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	FHIT	P49789	147 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	UBE2D3	P61077	147 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	UBE2D2	P62837	147 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	ATRAID	Q6UW56	229 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	SCX	Q7RTU7	201 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	ZFP82	Q8N141	532 aa		13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	LRP1	Q07954	4544 aa	Known RBP	13.72	□□□□□ -0.21
CHD9-208	ENST00000563410	RBFOX3	A6NFN3	312 aa		13.71	□□□□□ -0.21
CHD9-208	ENST00000563410	UBE2W	Q96B02	151 aa		13.71	□□□□□ -0.21
CHD9-208	ENST00000563410	TCEAL7	Q9BRU2	100 aa		13.71	□□□□□ -0.21
CHD9-208	ENST00000563410	TRBV7-3	A0A075B6L6	115 aa		13.7	□□□□□ -0.22
CHD9-208	ENST00000563410		A0A087WX48	190 aa		13.7	□□□□□ -0.22
CHD9-208	ENST00000563410	RPL36A	P83881	106 aa	Known RBP	13.7	□□□□□ -0.22
CHD9-208	ENST00000563410	CST9LP1	Q5W188	147 aa		13.7	□□□□□ -0.22
CHD9-208	ENST00000563410	RPL36AL	Q969Q0	106 aa	Known RBP	13.7	□□□□□ -0.22
CHD9-208	ENST00000563410	KRTAP29-1	A8MX34	341 aa	Predicted RBP	13.69	□□□□□ -0.22
CHD9-208	ENST00000563410	ARPC5	O15511	151 aa		13.69	□□□□□ -0.22
CHD9-208	ENST00000563410	OR10G8	Q8NGN5	311 aa		13.69	□□□□□ -0.22
CHD9-208	ENST00000563410	AKR1C3	P42330	323 aa		13.68	□□□□□ -0.22
CHD9-208	ENST00000563410	KRTAP10-4	P60372	401 aa	Predicted RBP	13.68	□□□□□ -0.22
CHD9-208	ENST00000563410	ELOB	Q15370	118 aa		13.68	□□□□□ -0.22
CHD9-208	ENST00000563410	DEFB104A	Q8WTQ1	72 aa		13.68	□□□□□ -0.22
CHD9-208	ENST00000563410	PAGE4	O60829	102 aa		13.67	□□□□□ -0.22
CHD9-208	ENST00000563410	RPL19	P84098	196 aa	Known RBP	13.67	□□□□□ -0.22
CHD9-208	ENST00000563410	NEXN-AS1	Q8NBZ9	246 aa		13.67	□□□□□ -0.22
CHD9-208	ENST00000563410	STOML3	Q8TAV4	291 aa		13.67	□□□□□ -0.22
CHD9-208	ENST00000563410	CHAC1	Q9BUX1	264 aa		13.67	□□□□□ -0.22
CHD9-208	ENST00000563410	TRBV6-8	A0A0A6YYG3	113 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410	RAB4B	P61018	213 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410	PRR27	Q6MZM9	219 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410	ENHO	Q6UWT2	76 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410	OR10AG1	Q8NH19	301 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410	FAT3	Q8TDW7	4589 aa		13.66	□□□□□ -0.22
CHD9-208	ENST00000563410		Q0VG73	95 aa		13.65	□□□□□ -0.22
CHD9-208	ENST00000563410	KCNIP4	Q6PIL6	250 aa		13.65	□□□□□ -0.22
CHD9-208	ENST00000563410	CIRBP-AS1	Q8TBR5	109 aa		13.65	□□□□□ -0.22
CHD9-208	ENST00000563410	MLST8	Q9BVC4	326 aa		13.65	□□□□□ -0.22
CHD9-208	ENST00000563410	CXCL1	P09341	107 aa		13.64	□□□□□ -0.23
CHD9-208	ENST00000563410	ZNF56	Q15929	161 aa		13.64	□□□□□ -0.23
CHD9-208	ENST00000563410	MPV17L2	Q567V2	206 aa		13.64	□□□□□ -0.23
CHD9-208	ENST00000563410	SCO2	A0A1W2PP80	73 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	TMEM262	E9PQX1	116 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	SMLR1	H3BR10	107 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	SNAI2	O43623	268 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	MBD3L1	Q8WWY6	194 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	SSBP4	Q9BWG4	385 aa	Predicted RBP	13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	PKHD1L1	Q86WI1	4243 aa		13.63	□□□□□ -0.23
CHD9-208	ENST00000563410	S100A9	P06702	114 aa	Known RBP	13.62	□□□□□ -0.23
CHD9-208	ENST00000563410	C15orf54	Q8N8G6	183 aa		13.62	□□□□□ -0.23
CHD9-208	ENST00000563410	C1orf43	Q9BWL3	253 aa		13.62	□□□□□ -0.23
CHD9-208	ENST00000563410	MUC21	A0A0G2JKD1	596 aa		13.61	□□□□□ -0.23
CHD9-208	ENST00000563410	MUC21	A0A140T8X8	626 aa		13.61	□□□□□ -0.23
CHD9-208	ENST00000563410		A0A1B0GV50	99 aa		13.61	□□□□□ -0.23
CHD9-208	ENST00000563410	SFT2D1	Q8WV19	159 aa		13.61	□□□□□ -0.23
CHD9-208	ENST00000563410	ZNF471	Q9BX82	626 aa	Predicted RBP	13.61	□□□□□ -0.23
CHD9-208	ENST00000563410	C14orf177	Q52M58	125 aa		13.6	□□□□□ -0.23
CHD9-208	ENST00000563410	BAGE2	Q86Y30	109 aa		13.6	□□□□□ -0.23
CHD9-208	ENST00000563410	KCNRG	Q8N5I3	272 aa		13.6	□□□□□ -0.23
CHD9-208	ENST00000563410	FAM213B	Q8TBF2	198 aa		13.6	□□□□□ -0.23
CHD9-208	ENST00000563410	CRP	P02741	224 aa		13.59	□□□□□ -0.23
CHD9-208	ENST00000563410	ANG	P03950	147 aa	Known RBP	13.59	□□□□□ -0.23
CHD9-208	ENST00000563410	OR5AL1	P0C617	328 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms