RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PSMG3-AS1Q96PY0 264 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 CNFNQ9BYD5 112 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 CENPEQ02224 2701 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 H3BRN7 92 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 IGKV1-17P01599 117 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 IGHV4-39P01824 125 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 FAM19A5Q7Z5A7 132 aaPredicted RBP10.13□□□□□ -0.79
CLK3-206ENST00000562078 BAALCQ8WXS3 180 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 SCGB3A1Q96QR1 104 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 RNF5Q99942 180 aa10.13□□□□□ -0.79
CLK3-206ENST00000562078 J3QKU1 62 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 NBR2O15453 112 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 EIF4EBP3O60516 100 aaPredicted RBP10.12□□□□□ -0.79
CLK3-206ENST00000562078 HLA-DMBP28068 263 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 KLK5Q9Y337 293 aaPredicted RBP10.12□□□□□ -0.79
CLK3-206ENST00000562078 LGALS9O00182 355 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 IGFL4Q6B9Z1 124 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 DYNAPQ8N1N2 210 aa10.12□□□□□ -0.79
CLK3-206ENST00000562078 NPFFO15130 113 aa10.11□□□□□ -0.79
CLK3-206ENST00000562078 RPL13AP40429 203 aaKnown RBP10.11□□□□□ -0.79
CLK3-206ENST00000562078 BPESC1Q9GZL8 116 aa10.11□□□□□ -0.79
CLK3-206ENST00000562078 USP9YO00507 2555 aaPredicted RBP10.11□□□□□ -0.79
CLK3-206ENST00000562078 MAP1AP78559 2803 aaPredicted RBP10.1□□□□□ -0.79
CLK3-206ENST00000562078 H3BMM0 161 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 EMP1P54849 157 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 LINC01620Q4KN68 170 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 C9orf153Q5TBE3 101 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 UBE2WQ96B02 151 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 CELSR2Q9HCU4 2923 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 FAM236AA0A1B0GUQ0 79 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 FAM236BA0A1B0GV22 79 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 NDUFA7O95182 113 aa10.1□□□□□ -0.79
CLK3-206ENST00000562078 CEMP1Q6PRD7 247 aaPredicted RBP10.1□□□□□ -0.79
CLK3-206ENST00000562078 SPG11Q96JI7 2443 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 HERVK_113P63121 156 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 COX8CQ7Z4L0 72 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 NPBQ8NG41 125 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 SIRPDQ9H106 197 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 CELSR1Q9NYQ6 3014 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 I3L2K1 104 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 M0R2P5 195 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 IGHV3-33P01772 117 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 ZNF491Q8N8L2 437 aa10.09□□□□□ -0.79
CLK3-206ENST00000562078 BEX4Q9NWD9 120 aaPredicted RBP10.09□□□□□ -0.79
CLK3-206ENST00000562078 TRGV11A0A075B6L2 103 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 TSPEAR-AS2P59090 65 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 TOMM6Q96B49 74 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 RNF125Q96EQ8 232 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 PIMREGQ9BSJ6 248 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 DUX3Q96PT4 197 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 EDA2RQ9HAV5 297 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 S4R3C0 116 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 ANKRD17O75179 2603 aaKnown RBP10.08□□□□□ -0.8
CLK3-206ENST00000562078 VPS13CQ709C8 3753 aa10.08□□□□□ -0.8
CLK3-206ENST00000562078 ATXN8Q156A1 80 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 IL17RELQ6ZVW7 336 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 C14orf178Q8N769 122 aaPredicted RBP10.07□□□□□ -0.8
CLK3-206ENST00000562078 SLC25A29Q8N8R3 303 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 DOPEY2Q9Y3R5 2298 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 RBAKDNA6NC62 111 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 K7EIM0 57 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 LMO4P61968 165 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 NDPQ00604 133 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 SMIM2Q9BVW6 85 aa10.07□□□□□ -0.8
CLK3-206ENST00000562078 FBN2P35556 2912 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 TRBV7-7A0A0K0K1E9 115 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 TRBV10-2A0A0K0K1G8 114 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 C11orf86A6NJI1 115 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 J3KT08 172 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 ERCC8Q13216 396 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 Q1RN00 199 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 MINOS1Q5TGZ0 78 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 TMEM263Q8WUH6 116 aaKnown RBP10.06□□□□□ -0.8
CLK3-206ENST00000562078 TMEM101Q96IK0 257 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 MINOS1-NBL1R4GNA1 71 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 ZNF22P17026 224 aaPredicted RBP10.06□□□□□ -0.8
CLK3-206ENST00000562078 PDE6HQ13956 83 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 C3orf22Q8N5N4 141 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 POM121L12Q8N7R1 296 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 TMEM190Q8WZ59 177 aa10.06□□□□□ -0.8
CLK3-206ENST00000562078 IGKV3D-20A0A0C4DH25 116 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 P0DMU3 169 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 FAM231AP0DMU4 169 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 FAM231CP0DMU5 169 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 PMVKQ15126 192 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 C2orf82Q6UX34 121 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 Q8N6K4 173 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 C10orf105Q8TEF2 133 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 HELZ2Q9BYK8 2649 aaKnown RBP10.05□□□□□ -0.8
CLK3-206ENST00000562078 HERVK_113P61574 105 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 EBI3Q14213 229 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 C2orf66Q6UXQ4 117 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 C11orf21Q9P2W6 132 aa10.05□□□□□ -0.8
CLK3-206ENST00000562078 CSMD2Q7Z408 3487 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 SAA4P35542 130 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 MFAP4P55083 255 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 LRRC75A-AS1Q8N1F1 130 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 CRYGDP07320 174 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 UBE2E1P51965 193 aa10.04□□□□□ -0.8
CLK3-206ENST00000562078 KRTAP10-9P60411 292 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms