RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TMEM170BQ5T4T1 132 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 SDIM1Q6ZPB5 146 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 RPS19BP1Q86WX3 136 aaKnown RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 ORMDL3Q8N138 153 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 OR1L8Q8NGR8 309 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 FAM57AQ8TBR7 257 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 ZCCHC13Q8WW36 166 aaKnown RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 DPH3Q96FX2 82 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 RTL8AQ9BWD3 113 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 MRPL20Q9BYC9 149 aaKnown RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 ENY2Q9NPA8 101 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 NXT2Q9NPJ8 142 aaKnown RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 TMEM14BQ9NUH8 114 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 PRO0628Q9UI54 55 aa1.8□□□□□ -2.12
VPS13C-208ENST00000559119 F11RQ9Y624 299 aaKnown RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 CHCHD2Q9Y6H1 151 aaPredicted RBP1.8□□□□□ -2.12
VPS13C-208ENST00000559119 SHANK1Q9Y566 2161 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 TRBV10-2A0A0K0K1G8 114 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 LOC107984640A0A0U1RRK4 108 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 TMEM30CPA0ZSE6 113 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 PGPA6NDG6 321 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 LINC01549A6NIU2 74 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 D6R8Y8 96 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 NDUFC2-KCTD14E9PQ53 114 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 F6UB75 175 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 H3BT86 120 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 H7C1H1 209 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 J3QT63 122 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 K7EM74 188 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 K7EMI3 77 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 OVOL1O14753 267 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 TCRAP04437 139 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 PSMB8P28062 276 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 ZNF137PP52743 207 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 UBE2L3P68036 154 aaKnown RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 LOXL1Q08397 574 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 KIAA0087Q14695 138 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 ATXN8Q156A1 80 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 C9orf153Q5TBE3 101 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 LINC00322Q6ZN03 302 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 Q6ZQT7 251 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 C5orf38Q86SI9 138 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 NDUFA11Q86Y39 141 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 AMN1Q8IY45 258 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 C10orf126Q8N4M7 172 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 TMEM75Q8N9X5 138 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 FXYD5Q96DB9 178 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 FGF23Q9GZV9 251 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 DEFB127Q9H1M4 99 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 PRORYQ9H606 182 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 OTORQ9NRC9 128 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 TMEM14CQ9P0S9 112 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 XCL2Q9UBD3 114 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 CCL26Q9Y258 94 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 KLF13Q9Y2Y9 288 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 FCGBPQ9Y6R7 5405 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-208ENST00000559119 FREM3P0C091 2139 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 NUMA1Q14980 2115 aa1.79□□□□□ -2.12
VPS13C-208ENST00000559119 C2orf16Q68DN1 1984 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 MUC22E2RYF6 1773 aaPredicted RBP1.78□□□□□ -2.12
VPS13C-208ENST00000559119 IGKV1OR2-108A0A075B7D4 117 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 TRAV17A0A0B4J275 112 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 A0A0B4J2C4 111 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 LOC107984156A0A0G2JMH3 177 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 TRBV30A0A0K0K1B3 111 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 OOSP1A8MZH6 123 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 F8VRH5 84 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 H3BMM0 161 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 ATOX1O00244 68 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 COX7A2P2O60397 106 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 TRACP01848 142 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 ARMS2P0C7Q2 107 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 COX6B1P14854 86 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 CD24P25063 80 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 CKS2P33552 79 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 HIST1H4AP62805 103 aaKnown RBP1.78□□□□□ -2.12
VPS13C-208ENST00000559119 PRCDQ00LT1 54 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 MRPL51Q4U2R6 128 aaKnown RBP1.78□□□□□ -2.12
VPS13C-208ENST00000559119 C10orf113Q5VZT2 155 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 Q5XG85 94 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 PATE2Q6UY27 113 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 Q86TA4 180 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 LINC00643Q86TS7 51 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 APRG1Q8IVJ8 170 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 ARL17AQ8IVW1 177 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 ZCCHC24Q8N2G6 241 aaKnown RBP1.78□□□□□ -2.12
VPS13C-208ENST00000559119 Q8N8P6 123 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 C8orf31Q8N9H6 132 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 UBE2WQ96B02 151 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 FLYWCH2Q96CP2 140 aaKnown RBP1.78□□□□□ -2.12
VPS13C-208ENST00000559119 PLEKHB2Q96CS7 222 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 FOXC2Q99958 501 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 CNFNQ9BYD5 112 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 PRO1854Q9UHT4 67 aa1.78□□□□□ -2.12
VPS13C-208ENST00000559119 DOCK11Q5JSL3 2073 aa1.78□□□□□ -2.13
VPS13C-208ENST00000559119 IGHV1-45A0A0A0MS14 117 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 TRAV8-1A0A0A6YYK1 113 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-208ENST00000559119 CCL15-CCL14A0A0B4J2E2 113 aa1.77□□□□□ -2.13
VPS13C-208ENST00000559119 LOC389332A0A1B0GUA5 103 aa1.77□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms