RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 C7orf71A4D174 169 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 F5H697 171 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 DEFB131AP59861 70 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 LGALS9BQ3B8N2 356 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 LGALS9CQ6DKI2 356 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 MRPL52Q86TS9 123 aaKnown RBP7.89□□□□□ -1.15
CUX1-217ENST00000558836 PCP2Q8IVA1 136 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 Q8N1Y9 231 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 VPS25Q9BRG1 176 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 ESM1Q9NQ30 184 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 SUMO2P61956 95 aaKnown RBP7.89□□□□□ -1.15
CUX1-217ENST00000558836 SCGB2A2Q13296 93 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 Q6ZSV7 163 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 TMEM61Q8N0U2 210 aa7.89□□□□□ -1.15
CUX1-217ENST00000558836 DNAJC9-AS1A6NH13 148 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 SMIM2Q9BVW6 85 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 LINC01619G3V211 115 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 LGALS9O00182 355 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 OR1N2Q8NGR9 330 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 AP1S3Q96PC3 154 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 TMEM160Q9NX00 188 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 OTOGQ6ZRI0 2925 aa7.88□□□□□ -1.15
CUX1-217ENST00000558836 COX8AP10176 69 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 MRAP2Q96G30 205 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 IGKV2D-26A0A0A0MRZ7 120 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 LINC01546A6NGU7 62 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1A1P0DJD3 496 aaKnown RBP7.87□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1CP0DJD4 496 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1FQ15415 496 aaKnown RBP7.87□□□□□ -1.15
CUX1-217ENST00000558836 RNF152Q8N8N0 203 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 OR9G4Q8NGQ1 327 aa7.87□□□□□ -1.15
CUX1-217ENST00000558836 PLA2G2AP14555 144 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 LINC00315P59091 139 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 C2orf91Q6ZV80 131 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 GTSCR1Q86UQ5 136 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 YAE1D1Q9NRH1 226 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 TRBV7-9A0A0J9YWB2 115 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 Q8N2B8 174 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 MRPL35Q9NZE8 188 aaKnown RBP7.86□□□□□ -1.15
CUX1-217ENST00000558836 IGHV3-16A0A0C4DH30 117 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 FGF6P10767 208 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 SMR3AQ99954 134 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 KIF25-AS1Q9Y6Z4 181 aa7.86□□□□□ -1.15
CUX1-217ENST00000558836 IGHV3-73A0A0B4J1V6 119 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 BVES-AS1Q5T3Y7 98 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 SUMO4Q6EEV6 95 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 OR4C5Q8NGB2 326 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 HHLA3Q9XRX5 114 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 IGHV1OR15-1A0A075B7D0 117 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 SAMD13Q5VXD3 122 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 AMTNQ6UX39 209 aa7.85□□□□□ -1.15
CUX1-217ENST00000558836 J3QKU1 62 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 CD28P10747 220 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 CD300EQ496F6 205 aaPredicted RBP7.84□□□□□ -1.15
CUX1-217ENST00000558836 ZC2HC1BQ5TFG8 222 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 DYNLRB2Q8TF09 96 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 C4orf3Q8WVX3 66 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 VWFP04275 2813 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1BA6NDE4 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1EA6NEQ0 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-217ENST00000558836 RBMY1DP0C7P1 496 aaKnown RBP7.84□□□□□ -1.15
CUX1-217ENST00000558836 UBE2V1Q13404 147 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 ZNF876PQ49A33 203 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 FOXI2Q6ZQN5 318 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 SCGB3A1Q96QR1 104 aa7.84□□□□□ -1.15
CUX1-217ENST00000558836 IGKCP01834 107 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 KRTAP1-1Q07627 177 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 ZNF56Q15929 161 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 RAX2Q96IS3 184 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 ZNF256Q9Y2P7 627 aaPredicted RBP7.83□□□□□ -1.16
CUX1-217ENST00000558836 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.83□□□□□ -1.16
CUX1-217ENST00000558836 K7EP13 123 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 MED14OSP0DP75 135 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 C2orf66Q6UXQ4 117 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 ORAOV1Q8WV07 137 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 C20orf78Q9BR46 151 aa7.83□□□□□ -1.16
CUX1-217ENST00000558836 H3BMM0 161 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 ATP5LO75964 103 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 DUSP14O95147 198 aaKnown RBP7.82□□□□□ -1.16
CUX1-217ENST00000558836 EMP1P54849 157 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 RPL39P62891 51 aaKnown RBP7.82□□□□□ -1.16
CUX1-217ENST00000558836 BOD1L2Q8IYS8 172 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 DEFB125Q8N687 156 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 C9orf85Q96MD7 179 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 CITED2Q99967 270 aaPredicted RBP7.82□□□□□ -1.16
CUX1-217ENST00000558836 PEMTQ9UBM1 199 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 FLNBO75369 2602 aaKnown RBP7.82□□□□□ -1.16
CUX1-217ENST00000558836 NBEAL2Q6ZNJ1 2754 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 DPM2O94777 84 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 NXPH4O95158 308 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 PROK1P58294 105 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 DEFB114Q30KQ6 69 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 ZMAT4Q9H898 229 aa7.82□□□□□ -1.16
CUX1-217ENST00000558836 CRYGDP07320 174 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 ORMDL2Q53FV1 153 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 COX11Q9Y6N1 276 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 TRAV8-6A0A0B4J262 113 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 SDHAF1A6NFY7 115 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 K7EMI3 77 aa7.81□□□□□ -1.16
CUX1-217ENST00000558836 C12orf54Q6X4T0 127 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms