RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 H3BTX0 84 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 TRGC2P03986 189 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 HIST1H1AQ02539 215 aaPredicted RBP5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 SMUG1Q53HV7 270 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 FAM162BQ5T6X4 162 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 ZFP82Q8N141 532 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 NUDT10Q8NFP7 164 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 OR10J6PQ8NGY7 276 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 NUDT11Q96G61 164 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 LINC00479Q96M42 142 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 MLST8Q9BVC4 326 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 RNASE7Q9H1E1 156 aaKnown RBP5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 TNFRSF18Q9Y5U5 241 aa5.59□□□□□ -1.51
CCDC88C-214ENST00000557507 DNAH8Q96JB1 4490 aa5.59□□□□□ -1.52
CCDC88C-214ENST00000557507 A0A096LPF7 62 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 TRBV7-9A0A0J9YWB2 115 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 GAGE12BA1L429 117 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 J3QL48 77 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 SLC17A3O00476 420 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 GAGE7O76087 117 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 IGLV2-8P01709 118 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 SNRPCP09234 159 aaKnown RBP5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 GAGE12FP0CL80 117 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 GAGE12GP0CL81 117 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 GAGE12IP0CL82 117 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 RAB4BP61018 213 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 RIGQ13278 110 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 KIR3DS1Q14943 382 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 Q6ZSN1 163 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 COX8CQ7Z4L0 72 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 NHLRC2Q8NBF2 726 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 OR8A1Q8NGG7 326 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 LINC00477Q96M19 166 aa5.58□□□□□ -1.52
CCDC88C-214ENST00000557507 A0A087WTM6 91 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 C5orf52A6NGY3 159 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 FABP5P3A8MUU1 101 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 H3BNG1 76 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 EREGO14944 169 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 SIVA1O15304 175 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 AKR1D1P51857 326 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 ZNF138P52744 262 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 NDUFA6P56556 154 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 SNRPEP62304 92 aaKnown RBP5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 FABP9Q0Z7S8 132 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 ZNF493Q6ZR52 646 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 OR2D3Q8NGH3 330 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 VSIG2Q96IQ7 327 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 PPP1R14DQ9NXH3 145 aa5.57□□□□□ -1.52
CCDC88C-214ENST00000557507 LRP1Q07954 4544 aaKnown RBP5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 C19orf71A6NCJ1 209 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 HIGD1CA8MV81 97 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 SNURFLB1AK76 121 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 NPIPB6E9PJ23 425 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 M0R3E3 92 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 NXPH4O95158 308 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 IGLV2-11P01706 119 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 APCSP02743 223 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 TRGC1P0CF51 173 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 CDKN1BP46527 198 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 FOXA3P55318 350 aaPredicted RBP5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 HBBP68871 147 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 GFI1BQ5VTD9 330 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 C9orf47Q6ZRZ4 202 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 Q6ZTI0 123 aa5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 MRPL18Q9H0U6 180 aaKnown RBP5.56□□□□□ -1.52
CCDC88C-214ENST00000557507 TRAV8-1A0A0A6YYK1 113 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 A0A1B0GUT8 65 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 F2Z2F3 143 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 FAM229AH3BQW9 127 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BKO60814 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BJP06899 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 CRISP2P16562 243 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BOP23527 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BBP33778 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 TCL1AP56279 114 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BDP58876 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BCP62807 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST2H2BEQ16778 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 SMIM15Q7Z3B0 74 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 NUP35Q8NFH5 326 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BHQ93079 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 SGK494Q96LW2 274 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BNQ99877 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 HIST1H2BMQ99879 126 aa5.55□□□□□ -1.52
CCDC88C-214ENST00000557507 IGKV2-40A0A087WW87 121 aaPredicted RBP5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 IGKV2D-40P01614 121 aaPredicted RBP5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 GCSHP23434 173 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 OR10J3Q5JRS4 329 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 BAGE3Q86Y29 109 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 TMEM18Q96B42 140 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 ZC2HC1AQ96GY0 325 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 C20orf144Q9BQM9 153 aa5.54□□□□□ -1.52
CCDC88C-214ENST00000557507 TRAV21A0A0B4J279 112 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 PRAC2D3DTV9 90 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 J3KRW8 73 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 SH2D1AO60880 128 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 ORM1P02763 201 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 SMIM6P0DI80 62 aa5.53□□□□□ -1.52
CCDC88C-214ENST00000557507 LEPP41159 167 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms