RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 PKHD1L1Q86WI1 4243 aa7.22□□□□□ -1.25
SYNE2-227ENST00000557307 FLG2Q5D862 2391 aaPredicted RBP7.22□□□□□ -1.25
SYNE2-227ENST00000557307 FAT3Q8TDW7 4589 aa7.21□□□□□ -1.25
SYNE2-227ENST00000557307 LRP1Q07954 4544 aaKnown RBP7.21□□□□□ -1.26
SYNE2-227ENST00000557307 SCO2A0A1W2PP80 73 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 M0R381 172 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 PAGE4O60829 102 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 RGS21Q2M5E4 152 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 LINC01559Q495D7 138 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 CST9LP1Q5W188 147 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 SFRP2Q96HF1 295 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 FMC1Q96HJ9 113 aa7.21□□□□□ -1.26
SYNE2-227ENST00000557307 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.2□□□□□ -1.26
SYNE2-227ENST00000557307 MUC21A0A0G2JKD1 596 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 TRBV6-1A0A0K0K1D8 114 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 MUC21A0A140T8X8 626 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 AKR1C3P42330 323 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 UBE2G1P62253 170 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 LAGE3Q14657 143 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 FAM162BQ5T6X4 162 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 KCNRGQ8N5I3 272 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 OR10AG1Q8NH19 301 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 FAM213BQ8TBF2 198 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 ZFP30Q9Y2G7 519 aa7.2□□□□□ -1.26
SYNE2-227ENST00000557307 PIK3CD-AS1Q5SR53 167 aa7.19□□□□□ -1.26
SYNE2-227ENST00000557307 NIT1Q86X76 327 aa7.19□□□□□ -1.26
SYNE2-227ENST00000557307 NTN5Q8WTR8 489 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-227ENST00000557307 BAALCQ8WXS3 180 aa7.19□□□□□ -1.26
SYNE2-227ENST00000557307 FRZBQ92765 325 aa7.19□□□□□ -1.26
SYNE2-227ENST00000557307 DMBT1Q9UGM3 2413 aaPredicted RBP7.19□□□□□ -1.26
SYNE2-227ENST00000557307 TPT1P13693 172 aaKnown RBP7.18□□□□□ -1.26
SYNE2-227ENST00000557307 UBE2D3P61077 147 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 UBE2D2P62837 147 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 SYT8Q8NBV8 401 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 MBD3L1Q8WWY6 194 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 TMEM70Q9BUB7 260 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 DERL1Q9BUN8 251 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 MLST8Q9BVC4 326 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 NKX6-2Q9C056 277 aaPredicted RBP7.18□□□□□ -1.26
SYNE2-227ENST00000557307 PHLDA3Q9Y5J5 127 aa7.18□□□□□ -1.26
SYNE2-227ENST00000557307 RHODO00212 210 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 BCL2L11O43521 198 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 CCL20P78556 96 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 ZNF345Q14585 488 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 Q6ZSA8 131 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 NEXN-AS1Q8NBZ9 246 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 STOML3Q8TAV4 291 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 SFT2D1Q8WV19 159 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 KLK12Q9UKR0 248 aa7.17□□□□□ -1.26
SYNE2-227ENST00000557307 SEC11BP0C7V7 166 aa7.16□□□□□ -1.26
SYNE2-227ENST00000557307 PRR27Q6MZM9 219 aa7.16□□□□□ -1.26
SYNE2-227ENST00000557307 ZFP82Q8N141 532 aa7.16□□□□□ -1.26
SYNE2-227ENST00000557307 ZNF471Q9BX82 626 aaPredicted RBP7.16□□□□□ -1.26
SYNE2-227ENST00000557307 IGKV2D-24A0A075B6R9 120 aa7.15□□□□□ -1.26
SYNE2-227ENST00000557307 SNAI2O43623 268 aa7.15□□□□□ -1.26
SYNE2-227ENST00000557307 GZMBP10144 247 aa7.15□□□□□ -1.26
SYNE2-227ENST00000557307 SSTP61278 116 aa7.15□□□□□ -1.26
SYNE2-227ENST00000557307 A0A087WWC5 75 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 TRAV8-3A0A0A6YYJ7 113 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 RBFOX3A6NFN3 312 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 HMSDA8MTL9 139 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 IGLV2-8P01709 118 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 ZNF56Q15929 161 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 MPV17L2Q567V2 206 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 ENHOQ6UWT2 76 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 NTM-AS1Q6ZSK4 140 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 UBE2WQ96B02 151 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 TCEAL7Q9BRU2 100 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 TM2D2Q9BX73 214 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 KIF25-AS1Q9Y6Z4 181 aa7.14□□□□□ -1.27
SYNE2-227ENST00000557307 TRBV7-3A0A075B6L6 115 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 C1QBP02746 253 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 RPL35P42766 123 aaKnown RBP7.13□□□□□ -1.27
SYNE2-227ENST00000557307 RPL36AP83881 106 aaKnown RBP7.13□□□□□ -1.27
SYNE2-227ENST00000557307 TMUB2Q71RG4 321 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 SCXQ7RTU7 201 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 BAGE2Q86Y30 109 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 Q8N976 141 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 OR10G8Q8NGN5 311 aa7.13□□□□□ -1.27
SYNE2-227ENST00000557307 RPL36ALQ969Q0 106 aaKnown RBP7.13□□□□□ -1.27
SYNE2-227ENST00000557307 SSBP4Q9BWG4 385 aaPredicted RBP7.13□□□□□ -1.27
SYNE2-227ENST00000557307 TRBV6-8A0A0A6YYG3 113 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 TRBV10-1A0A0K0K1A3 114 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 KANTRA0A1W2PQU2 76 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 UMAD1C9J7I0 102 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 FAM229AH3BQW9 127 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 PFDN1O60925 122 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 CXCL1P09341 107 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 H2AFB1P0C5Y9 115 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 KRTAP10-4P60372 401 aaPredicted RBP7.12□□□□□ -1.27
SYNE2-227ENST00000557307 ATRAIDQ6UW56 229 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 LINC00528Q8N1L1 170 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 GNG13Q9P2W3 67 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 BOLA1Q9Y3E2 137 aa7.12□□□□□ -1.27
SYNE2-227ENST00000557307 TRBV20OR9-2A0A075B6H5 130 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 A0A0D9SG52 128 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 RAB19A4D1S5 217 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 OR5AL1P0C617 328 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 RAB4BP61018 213 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 CENPWQ5EE01 88 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms