RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LINC01559Q495D7 138 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 C10orf105Q8TEF2 133 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 IGHV7-4-1A0A0J9YVY3 117 aa11.33□□□□□ -0.6
CUX1-215ENST00000556210 ZFAND3Q9H8U3 227 aa11.33□□□□□ -0.6
CUX1-215ENST00000556210 TNFRSF18Q9Y5U5 241 aa11.33□□□□□ -0.6
CUX1-215ENST00000556210 SVEP1Q4LDE5 3571 aa11.33□□□□□ -0.6
CUX1-215ENST00000556210 F8W1H4 67 aa11.33□□□□□ -0.6
CUX1-215ENST00000556210 IGLL5B9A064 214 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 TCTEX1D4Q5JR98 221 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 SMIM2Q9BVW6 85 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 KLHL30-AS1Q8NEE0 82 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 IGHV3-38A0A0C4DH36 116 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 XCL2Q9UBD3 114 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 SDHAF1A6NFY7 115 aa11.32□□□□□ -0.6
CUX1-215ENST00000556210 TRBV6-1A0A0K0K1D8 114 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 AVPP01185 164 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 PRM2P04554 102 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 FGF6P10767 208 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 PRR9Q5T870 116 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 HIST2H2BCQ6DN03 193 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 LINC01356Q8N9X3 169 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 LINC01549A6NIU2 74 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 SLC25A16P16260 332 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 RAX2Q96IS3 184 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 RPL39P62891 51 aaKnown RBP11.31□□□□□ -0.6
CUX1-215ENST00000556210 C16orf54Q6UWD8 224 aa11.31□□□□□ -0.6
CUX1-215ENST00000556210 TRAV2A0A0B4J234 112 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 MRPS12O15235 138 aaKnown RBP11.3□□□□□ -0.6
CUX1-215ENST00000556210 Q96MF0 132 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 A0A096LNJ9 63 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 FOXI2Q6ZQN5 318 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 DLX4Q92988 240 aaPredicted RBP11.3□□□□□ -0.6
CUX1-215ENST00000556210 VCX2Q9H322 139 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 ADARB2-AS1A8MUL3 147 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 SLURP1P55000 103 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 Q8N6K4 173 aa11.3□□□□□ -0.6
CUX1-215ENST00000556210 CFAP46Q8IYW2 2715 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 F8VRH5 84 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 TRAV8-2A0A0B4J237 113 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 UFSP1Q6NVU6 142 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 A0A087WX48 190 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 MYMXA0A1B0GTQ4 84 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 APRG1Q8IVJ8 170 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 PRADC1Q9BSG0 188 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 SPXQ9BT56 116 aa11.29□□□□□ -0.6
CUX1-215ENST00000556210 ITPR1Q14643 2758 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 DUSP14O95147 198 aaKnown RBP11.28□□□□□ -0.6
CUX1-215ENST00000556210 YAE1D1Q9NRH1 226 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 SPINK8P0C7L1 97 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 IGLC6P0CF74 106 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 HIGD1BQ9P298 99 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 CLPSL1A2RUU4 121 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 HOXD3P31249 432 aaPredicted RBP11.28□□□□□ -0.6
CUX1-215ENST00000556210 MDFICQ9P1T7 246 aa11.28□□□□□ -0.6
CUX1-215ENST00000556210 EBI3Q14213 229 aa11.27□□□□□ -0.6
CUX1-215ENST00000556210 RRN3P1Q2M238 152 aa11.27□□□□□ -0.6
CUX1-215ENST00000556210 OPRPNQ99935 248 aaPredicted RBP11.27□□□□□ -0.6
CUX1-215ENST00000556210 GEMIN7Q9H840 131 aaKnown RBP11.27□□□□□ -0.6
CUX1-215ENST00000556210 CRYBG3Q68DQ2 2970 aa11.27□□□□□ -0.6
CUX1-215ENST00000556210 PRSS29PA6NIE9 313 aa11.27□□□□□ -0.61
CUX1-215ENST00000556210 CFHR3Q02985 330 aa11.27□□□□□ -0.61
CUX1-215ENST00000556210 HLA-DRB4P13762 266 aa11.27□□□□□ -0.61
CUX1-215ENST00000556210 HLA-DRB4X5D2U9 266 aa11.27□□□□□ -0.61
CUX1-215ENST00000556210 CD28P10747 220 aa11.26□□□□□ -0.61
CUX1-215ENST00000556210 ZNF625Q96I27 306 aaPredicted RBP11.26□□□□□ -0.61
CUX1-215ENST00000556210 ATP6V0BQ99437 205 aa11.26□□□□□ -0.61
CUX1-215ENST00000556210 NSUN5P1Q3KNT7 163 aa11.26□□□□□ -0.61
CUX1-215ENST00000556210 RNF185Q96GF1 192 aa11.26□□□□□ -0.61
CUX1-215ENST00000556210 A8MWV9 139 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 VCYO14598 125 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 IGHG2P01859 326 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 RPL35AP18077 110 aaKnown RBP11.25□□□□□ -0.61
CUX1-215ENST00000556210 IGHV4OR15-8A0A075B7B6 117 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 A0A087WW49 117 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 MAPKAPK5-AS1Q8N8E1 139 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 U3KQK5 164 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 PPP1R17O96001 155 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 TAL2Q16559 108 aa11.25□□□□□ -0.61
CUX1-215ENST00000556210 COL27A1Q8IZC6 1860 aaPredicted RBP11.24□□□□□ -0.61
CUX1-215ENST00000556210 TRGV1A0A0A0MS02 117 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 IGHG4P01861 327 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 C9orf47Q6ZRZ4 202 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 STHQ8IWL8 128 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 GATD1Q8NB37 220 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 ZNF48Q96MX3 618 aaPredicted RBP11.24□□□□□ -0.61
CUX1-215ENST00000556210 SPAG8Q99932 426 aaPredicted RBP11.24□□□□□ -0.61
CUX1-215ENST00000556210 DCHS2Q6V1P9 2916 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 Q8N1Y9 231 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 MRAP2Q96G30 205 aa11.24□□□□□ -0.61
CUX1-215ENST00000556210 TOMM7Q9P0U1 55 aa11.23□□□□□ -0.61
CUX1-215ENST00000556210 TRGV2A0A075B6R0 118 aa11.23□□□□□ -0.61
CUX1-215ENST00000556210 IGHV1OR15-1A0A075B7D0 117 aa11.23□□□□□ -0.61
CUX1-215ENST00000556210 RBAKDNA6NC62 111 aa11.23□□□□□ -0.61
CUX1-215ENST00000556210 ZANQ9Y493 2812 aa11.22□□□□□ -0.61
CUX1-215ENST00000556210 P0DMU3 169 aa11.22□□□□□ -0.61
CUX1-215ENST00000556210 FAM231AP0DMU4 169 aa11.22□□□□□ -0.61
CUX1-215ENST00000556210 FAM231CP0DMU5 169 aa11.22□□□□□ -0.61
CUX1-215ENST00000556210 PRORYQ9H606 182 aa11.22□□□□□ -0.61
CUX1-215ENST00000556210 PAPPA-AS1Q5QFB9 102 aa11.21□□□□□ -0.61
CUX1-215ENST00000556210 ANAPC13Q9BS18 74 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms