RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 GLI2P10070 1586 aa2.14□□□□□ -2.07
LINC00643-204ENST00000555934 PPLO60437 1756 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 PTPRSQ13332 1948 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 TANC2Q9HCD6 1990 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 ZNF705FA8MVS1 300 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-204ENST00000555934 SSSCA1O60232 199 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 MRPS14O60783 128 aaKnown RBP2.13□□□□□ -2.07
LINC00643-204ENST00000555934 COX7CP15954 63 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 SNCAP37840 140 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 ROMO1P60602 79 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 DCDP81605 110 aaKnown RBP2.13□□□□□ -2.07
LINC00643-204ENST00000555934 PEA15Q15121 130 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 NNATQ16517 81 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 IQCJQ1A5X6 159 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 SPRNQ5BIV9 151 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 ZNF720Q7Z2F6 126 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 SBSPONQ8IVN8 264 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 TSKUQ8WUA8 353 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 ZNF625Q96I27 306 aaPredicted RBP2.13□□□□□ -2.07
LINC00643-204ENST00000555934 Q96M85 177 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 LINC00052Q96N35 136 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 SLC50A1Q9BRV3 221 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 DPH3P1Q9H4G8 78 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 HHLA3Q9XRX5 114 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 DIP2AQ14689 1571 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 WDR90Q96KV7 1748 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 MYH1P12882 1939 aa2.13□□□□□ -2.07
LINC00643-204ENST00000555934 HELZP42694 1942 aaKnown RBP2.13□□□□□ -2.07
LINC00643-204ENST00000555934 ZFC3H1O60293 1989 aaKnown RBP2.12□□□□□ -2.07
LINC00643-204ENST00000555934 MROH2AA6NES4 1674 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 IGHV1-18A0A0C4DH31 117 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 LOC107984156A0A0G2JMH3 177 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 K7EP34 96 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 PROSCO94903 275 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 CRPP02741 224 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 PIPP12273 146 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-204ENST00000555934 ATP5EP56381 51 aaPredicted RBP2.12□□□□□ -2.07
LINC00643-204ENST00000555934 ERHP84090 104 aaKnown RBP2.12□□□□□ -2.07
LINC00643-204ENST00000555934 C1orf134Q5TEV5 83 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 UNQ5815/PRO19632Q6UWF5 114 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 ARL17AQ8IVW1 177 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 Q8N8P6 123 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 LINC00301Q8NCQ3 95 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 C10orf82Q8WW14 230 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 SMIM7Q9BQ49 75 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 TIMM21Q9BVV7 248 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 C14orf132Q9NPU4 83 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 KIDINS220Q9ULH0 1771 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 PTPRMP28827 1452 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 ROBO1Q9Y6N7 1651 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 AGLP35573 1532 aa2.12□□□□□ -2.07
LINC00643-204ENST00000555934 ARAP2Q8WZ64 1704 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 GREB1Q4ZG55 1949 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 ERCC6L2Q5T890 1561 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 IGKV1D-42A0A075B6H8 117 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 TRAV14DV4A0A0A6YYC5 116 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 TRAV1-1A0A0B4J248 108 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 UBE2L5PA0A1B0GUS4 154 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 GNGT2O14610 69 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 PIRTP0C851 137 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 TRAPPC2P0DI81 140 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 TRAPPC2BP0DI82 140 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 MGST1P10620 155 aaKnown RBP2.11□□□□□ -2.07
LINC00643-204ENST00000555934 UBE2L3P68036 154 aaKnown RBP2.11□□□□□ -2.07
LINC00643-204ENST00000555934 INSL4Q14641 139 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 C5orf38Q86SI9 138 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 FAM19A2Q8N3H0 131 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 PRO2289Q9P1D8 64 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 CD163L1Q9NR16 1453 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 ABCA3Q99758 1704 aa2.11□□□□□ -2.07
LINC00643-204ENST00000555934 EDC4Q6P2E9 1401 aaKnown RBP2.1□□□□□ -2.07
LINC00643-204ENST00000555934 C10orf71Q711Q0 1435 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 MDC1Q14676 2089 aaKnown RBP2.1□□□□□ -2.07
LINC00643-204ENST00000555934 USP54Q70EL1 1684 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 C5orf67F2Z3F1 127 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 UBL3O95164 117 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 NMBP08949 121 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 ASIPP42127 132 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 ALKAL2Q6UX46 152 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 MUCL1Q96DR8 90 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 S100A13Q99584 98 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 KNDC1Q76NI1 1749 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 CPS1P31327 1500 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 MCM3APO60318 1980 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 DIP2CQ9Y2E4 1556 aa2.1□□□□□ -2.07
LINC00643-204ENST00000555934 TMEM131LA2VDJ0 1609 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 LRRC37A3O60309 1634 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 CRYBG1Q9Y4K1 1723 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 HEATR5AQ86XA9 2040 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 TMSB15BA0A087X1C1 80 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 F8W1H4 67 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 CYB5AP00167 134 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 GYPAP02724 150 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 SLC25A6P12236 298 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 TDRG1Q3Y452 100 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 SPANXN5Q5MJ07 72 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 SPANXN1Q5VSR9 72 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 ZNF826PQ6ZT77 177 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 SLC25A26Q70HW3 274 aa2.09□□□□□ -2.07
LINC00643-204ENST00000555934 ARPINQ7Z6K5 226 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms