RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 NBPF19A0A087WUL8 3843 aa1.24□□□□□ -2.21
VRK1-202ENST00000553683 MYO5BQ9ULV0 1848 aa1.24□□□□□ -2.21
VRK1-202ENST00000553683 RYR3Q15413 4870 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 KIAA1109Q2LD37 5005 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 MYH10P35580 1976 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 LRBAP50851 2863 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 MTORP42345 2549 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 TRPM7Q96QT4 1865 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 ZNF106Q9H2Y7 1883 aaKnown RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 hADV29S1A0JD25 119 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 FAM24AA6NFZ4 105 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 C17orf112F2Z3M2 114 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 SDCBPO00560 298 aaPredicted RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 CREBL2O60519 120 aaPredicted RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 IGKCP01834 107 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 HBDP02042 147 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 IL3RAP26951 378 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 RNASE4P34096 147 aaKnown RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 SSR2P43308 183 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 HIST1H4AP62805 103 aaKnown RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 SS18Q15532 418 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 KRTAP13-4Q3LI77 160 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 LINC01554Q52M75 96 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 MIC13Q5XKP0 118 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 C5orf38Q86SI9 138 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 AMN1Q8IY45 258 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 DEFB107AQ8IZN7 70 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 ORMDL3Q8N138 153 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 ZNF645Q8N7E2 425 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 OR8B3Q8NGG8 313 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 FAM57AQ8TBR7 257 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 WFDC5Q8TCV5 224 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 COPS9Q8WXC6 57 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 ABHD14BQ96IU4 210 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 ODF3Q96PU9 254 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 PMCHL2Q9BQD1 86 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 CXCL16Q9H2A7 254 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 SND1-IT1Q9HBX3 110 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 SLC39A9Q9NUM3 307 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 R4GN34 69 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 QSER1Q2KHR3 1735 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 TRPM3Q9HCF6 1732 aaPredicted RBP1.23□□□□□ -2.21
VRK1-202ENST00000553683 ANKRD26Q9UPS8 1709 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 DMXL2Q8TDJ6 3036 aa1.23□□□□□ -2.21
VRK1-202ENST00000553683 LAMA5O15230 3695 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 PLXNA3P51805 1871 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 TRPM1Q7Z4N2 1603 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CHD2O14647 1828 aaKnown RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 SBF2Q86WG5 1849 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 ADGRB1O14514 1584 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 PLXNC1O60486 1568 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 N4BP2Q86UW6 1770 aaPredicted RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 IGLV3-9A0A075B6K5 115 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 TRAV14DV4A0A0A6YYC5 116 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 TRAV17A0A0B4J275 112 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 A0A0G2JND7 137 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 MDFIC2A0A1B0GVS7 189 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 NAP1L6A6NFF2 107 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 A6NN06 94 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 IBA57-AS1B1ANH7 110 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 UMAD1C9J7I0 102 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 C9JCJ5 164 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 E7EQL1 145 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 K7ERJ3 54 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 IGHV3-7P01780 117 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 IGKV1-16P04430 117 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 SRP19P09132 144 aaKnown RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 CCL4P13236 92 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CSN1S1P47710 185 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 DYNLT3P51808 116 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CMC4P56277 68 aaPredicted RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 FGF12P61328 243 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 NPC2P61916 151 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CCL20P78556 96 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CCL8P80075 99 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 ADIGQ0VDE8 80 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 MPV17LQ2QL34 196 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 PYDC2Q56P42 97 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 CFAP126Q5VTH2 177 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 C2orf91Q6ZV80 131 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 Q8N8P6 123 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 SLC25A29Q8N8R3 303 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 Q8NDZ9 215 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 ITLN2Q8WWU7 325 aaPredicted RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 OR8B2Q96RD0 313 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 HIGD1BQ9P298 99 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 ZNF706Q9Y5V0 76 aaPredicted RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 CSMD1Q96PZ7 3565 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 LRRIQ1Q96JM4 1722 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 EDC4Q6P2E9 1401 aaKnown RBP1.22□□□□□ -2.21
VRK1-202ENST00000553683 HYDINQ4G0P3 5121 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 PTPN23Q9H3S7 1636 aa1.22□□□□□ -2.21
VRK1-202ENST00000553683 SORL1Q92673 2214 aa1.21□□□□□ -2.21
VRK1-202ENST00000553683 SCN11AQ9UI33 1791 aa1.21□□□□□ -2.22
VRK1-202ENST00000553683 USP9YO00507 2555 aaPredicted RBP1.21□□□□□ -2.22
VRK1-202ENST00000553683 ADGRB3O60242 1522 aa1.21□□□□□ -2.22
VRK1-202ENST00000553683 MYH7P12883 1935 aa1.21□□□□□ -2.22
VRK1-202ENST00000553683 MYH13Q9UKX3 1938 aa1.21□□□□□ -2.22
VRK1-202ENST00000553683 CCDC88AQ3V6T2 1871 aa1.21□□□□□ -2.22
VRK1-202ENST00000553683 ATP7BP35670 1465 aa1.21□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms