RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 Q5BKY6 102 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 PDZD11Q5EBL8 140 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 RNASEKQ6P5S7 137 aaKnown RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 UQCC3Q6UW78 93 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SNX29P2Q8IUI4 249 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 C15orf54Q8N8G6 183 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 TMEM229BQ8NBD8 167 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 C11orf72Q8NBR9 251 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 ZNF738Q8NE65 137 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 OR4C5Q8NGB2 326 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 MCFD2Q8NI22 146 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 MARCH1Q8TCQ1 289 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 ORAOV1Q8WV07 137 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 PCNPQ8WW12 178 aaKnown RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SLC35E1Q96K37 410 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 LINC00467Q9BRT7 94 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SHANK2-AS3Q9BTD1 123 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 RBKSQ9H477 322 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 NAA60Q9H7X0 242 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SLC25A22Q9H936 323 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 SMCO4Q9NRQ5 59 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 MTFP1Q9UDX5 166 aa2.33□□□□□ -2.04
LIMA1-206ENST00000550611 C14orf166Q9Y224 244 aaKnown RBP2.33□□□□□ -2.04
LIMA1-206ENST00000550611 A0A0B4J2A0 478 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 IGHV3-38A0A0C4DH36 116 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 NDUFAF8A1L188 74 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 GABARAPH6UMI1 98 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 H7C423 109 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 SNAI2O43623 268 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 SPINK4O60575 86 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 GABARAPO95166 117 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 MT-ND4LP03901 98 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 CT45A10P0DMU9 189 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 AKR1C4P17516 323 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 RPL7P18124 248 aaKnown RBP2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ORM2P19652 201 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 NDUFV3P56181 108 aaKnown RBP2.32□□□□□ -2.04
LIMA1-206ENST00000550611 NCS1P62166 190 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 IFITM3Q01628 133 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 RHEBQ15382 184 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 SURF2Q15527 256 aaPredicted RBP2.32□□□□□ -2.04
LIMA1-206ENST00000550611 MUC21Q5SSG8 566 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 KCNIP4Q6PIL6 250 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ATRAIDQ6UW56 229 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 PATE2Q6UY27 113 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ERASQ7Z444 233 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 LYZL2Q7Z4W2 148 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 WFDC10BQ8IUB3 73 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 Q8N814 137 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 OR1S1Q8NH92 325 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 C15orf40Q8WUR7 153 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ASB13Q8WXK3 278 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 PTH2Q96A98 100 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 RPUSD4Q96CM3 377 aaKnown RBP2.32□□□□□ -2.04
LIMA1-206ENST00000550611 YIPF6Q96EC8 236 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 LINC00479Q96M42 142 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ODF3Q96PU9 254 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 SIGMAR1Q99720 223 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 TMEM147Q9BVK8 224 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 PRO1933Q9H354 126 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ZNF331Q9NQX6 463 aaPredicted RBP2.32□□□□□ -2.04
LIMA1-206ENST00000550611 COMMD3Q9UBI1 195 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 SHPKQ9UHJ6 478 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 PRO0255Q9UI72 69 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 ICOSQ9Y6W8 199 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 LY96Q9Y6Y9 160 aa2.32□□□□□ -2.04
LIMA1-206ENST00000550611 TRGV2A0A075B6R0 118 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 TRAV12-3A0A0B4J271 114 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 FAM74A7A6NL05 159 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 IBA57-AS1B1ANH7 110 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 K7EPK0 472 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 PHOX2AO14813 284 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 HYPMO75409 117 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 SLC25A6P12236 298 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 CXCL2P19875 107 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 PMCHP20382 165 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 EVI2AP22794 236 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 TCL1AP56279 114 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 SEC61GP60059 68 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 RANP62826 216 aaKnown RBP2.31□□□□□ -2.04
LIMA1-206ENST00000550611 SRPXP78539 464 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 BAXQ07812 192 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 WFDC2Q14508 124 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 MRPL23Q16540 153 aaKnown RBP2.31□□□□□ -2.04
LIMA1-206ENST00000550611 FAM74A3Q4VXF1 159 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 OCIAD2Q56VL3 154 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 CYP2G1PQ6ZSU1 146 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 NEGR1Q7Z3B1 354 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 FAM19A4Q96LR4 140 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 VGLL1Q99990 258 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 MRPL32Q9BYC8 188 aaKnown RBP2.31□□□□□ -2.04
LIMA1-206ENST00000550611 C20orf85Q9H1P6 137 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 MED28Q9H204 178 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 RPS10P5Q9NQ39 176 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 LYRM2Q9NU23 88 aaPredicted RBP2.31□□□□□ -2.04
LIMA1-206ENST00000550611 HHLA3Q9XRX5 114 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 FUT9Q9Y231 359 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 HIGD1AQ9Y241 93 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 KLF12Q9Y4X4 402 aa2.31□□□□□ -2.04
LIMA1-206ENST00000550611 IGLV4-3A0A075B6K6 122 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms