RNA–Protein interactions for RNA: ENST00000549655.5

BRF1-215, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, human

TSL 2

Gene BRF1, Length 1,962 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRF1-215	ENST00000549655	TRAV9-2	A0A087WT02	112 aa		14.05	□□□□□ -0.16
BRF1-215	ENST00000549655		A0A087WWL8	130 aa		14.05	□□□□□ -0.16
BRF1-215	ENST00000549655	FCER1G	P30273	86 aa		14.05	□□□□□ -0.16
BRF1-215	ENST00000549655	C14orf144	Q96I85	54 aa		14.05	□□□□□ -0.16
BRF1-215	ENST00000549655	CLUHP3	Q96NS8	147 aa		14.05	□□□□□ -0.16
BRF1-215	ENST00000549655	IGLV1-51	P01701	117 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	SUMO2	P61956	95 aa	Known RBP	14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	LINC01545	Q5VT33	79 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	STH	Q8IWL8	128 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	C20orf78	Q9BR46	151 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	SMIM2	Q9BVW6	85 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	C2CD3	Q4AC94	2353 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	TCAP	O15273	167 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	CRLF1	O75462	422 aa		14.03	□□□□□ -0.16
BRF1-215	ENST00000549655	PPP1R17	O96001	155 aa		14.02	□□□□□ -0.16
BRF1-215	ENST00000549655	LAGE3	Q14657	143 aa		14.02	□□□□□ -0.16
BRF1-215	ENST00000549655	TMEM158	Q8WZ71	300 aa		14.02	□□□□□ -0.16
BRF1-215	ENST00000549655	IFI27L1	Q96BM0	104 aa		14.02	□□□□□ -0.16
BRF1-215	ENST00000549655	MIEN1	Q9BRT3	115 aa		14.02	□□□□□ -0.16
BRF1-215	ENST00000549655	PRM2	P04554	102 aa		14.02	□□□□□ -0.17
BRF1-215	ENST00000549655	ZNF876P	Q49A33	203 aa		14.02	□□□□□ -0.17
BRF1-215	ENST00000549655	PMCHL2	Q9BQD1	86 aa		14.02	□□□□□ -0.17
BRF1-215	ENST00000549655	INS	P01308	110 aa		14.01	□□□□□ -0.17
BRF1-215	ENST00000549655	FAM74A4	Q5TZK3	123 aa		14.01	□□□□□ -0.17
BRF1-215	ENST00000549655		F5H697	171 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	SUMO4	Q6EEV6	95 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	TRPT1	Q86TN4	253 aa	Known RBP	14	□□□□□ -0.17
BRF1-215	ENST00000549655	C18orf15	Q96N68	181 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	LINC01587	Q99440	93 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	PF4	P02776	101 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	CRYGD	P07320	174 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	IGLL1	P15814	213 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	CMC4	P56277	68 aa	Predicted RBP	14	□□□□□ -0.17
BRF1-215	ENST00000549655	XCL2	Q9UBD3	114 aa		14	□□□□□ -0.17
BRF1-215	ENST00000549655	NIPBL	Q6KC79	2804 aa	eCLIP	13.99	□□□□□ -0.17
BRF1-215	ENST00000549655	IGLC3	P0DOY3	106 aa		13.98	□□□□□ -0.17
BRF1-215	ENST00000549655	LINC00467	Q9BRT7	94 aa		13.98	□□□□□ -0.17
BRF1-215	ENST00000549655	hDV102S1	A0JD36	115 aa		13.97	□□□□□ -0.17
BRF1-215	ENST00000549655	ZNF415	Q09FC8	603 aa		13.97	□□□□□ -0.17
BRF1-215	ENST00000549655	ZNF56	Q15929	161 aa		13.97	□□□□□ -0.17
BRF1-215	ENST00000549655	BEAN1	Q3B7T3	259 aa		13.97	□□□□□ -0.17
BRF1-215	ENST00000549655	NUDT3	O95989	172 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	LGALS9B	Q3B8N2	356 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	LGALS9C	Q6DKI2	356 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	LINC00482	Q8N8I6	264 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	CSTL1	Q9H114	145 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	ST20	Q9HBF5	79 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	UQCR10	Q9UDW1	63 aa		13.96	□□□□□ -0.17
BRF1-215	ENST00000549655	NUTF2	P61970	127 aa	Known RBP	13.96	□□□□□ -0.18
BRF1-215	ENST00000549655	ORMDL2	Q53FV1	153 aa		13.96	□□□□□ -0.18
BRF1-215	ENST00000549655	FAM110A	Q9BQ89	295 aa		13.96	□□□□□ -0.18
BRF1-215	ENST00000549655	HSBP1L1	C9JCN9	74 aa		13.95	□□□□□ -0.18
BRF1-215	ENST00000549655		K7EMI3	77 aa		13.95	□□□□□ -0.18
BRF1-215	ENST00000549655		M0R2P5	195 aa		13.95	□□□□□ -0.18
BRF1-215	ENST00000549655	C19orf73	Q9NVV2	129 aa		13.95	□□□□□ -0.18
BRF1-215	ENST00000549655	GOLT1B	Q9Y3E0	138 aa		13.95	□□□□□ -0.18
BRF1-215	ENST00000549655	CTAG1A	P78358	180 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	C11orf72	Q8NBR9	251 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	TMEM208	Q9BTX3	173 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	WFDC10A	Q9H1F0	79 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	RPL32	P62910	135 aa	Known RBP	13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	C1orf158	Q8N1D5	194 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655	JMJD1C	Q15652	2540 aa		13.94	□□□□□ -0.18
BRF1-215	ENST00000549655		M0QY20	66 aa		13.93	□□□□□ -0.18
BRF1-215	ENST00000549655	ATP5L	O75964	103 aa		13.93	□□□□□ -0.18
BRF1-215	ENST00000549655	NEGR1	Q7Z3B1	354 aa		13.93	□□□□□ -0.18
BRF1-215	ENST00000549655	FLNB	O75369	2602 aa	Known RBP	13.93	□□□□□ -0.18
BRF1-215	ENST00000549655	IGHV3OR16-12	A0A075B7B8	117 aa		13.92	□□□□□ -0.18
BRF1-215	ENST00000549655	PRSS1	P07477	247 aa		13.92	□□□□□ -0.18
BRF1-215	ENST00000549655	POLR2K	P53803	58 aa	Known RBP	13.92	□□□□□ -0.18
BRF1-215	ENST00000549655	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	13.92	□□□□□ -0.18
BRF1-215	ENST00000549655	TRBV6-5	A0A0K0K1A5	114 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	PIK3CD-AS1	Q5SR53	167 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	MORN3	Q6PF18	240 aa	Predicted RBP	13.91	□□□□□ -0.18
BRF1-215	ENST00000549655		Q6ZN92	141 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	PTH2	Q96A98	100 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	VCY	O14598	125 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	AZU1	P20160	251 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	TOMM6	Q96B49	74 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	SPX	Q9BT56	116 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	DKK2	Q9UBU2	259 aa		13.91	□□□□□ -0.18
BRF1-215	ENST00000549655	SDHAF1	A6NFY7	115 aa		13.9	□□□□□ -0.18
BRF1-215	ENST00000549655		A8MWV9	139 aa		13.9	□□□□□ -0.18
BRF1-215	ENST00000549655	GIG44	P09565	113 aa	Predicted RBP	13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	RPL35A	P18077	110 aa	Known RBP	13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	F8	P00451	2351 aa		13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	IGHV3-73	A0A0B4J1V6	119 aa		13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	ODF1	Q14990	250 aa		13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	SNHG12	Q9BXW3	62 aa		13.89	□□□□□ -0.19
BRF1-215	ENST00000549655	TRBV27	A0A0K0K1C4	114 aa		13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	EREG	O14944	169 aa		13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	UFSP1	Q6NVU6	142 aa		13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	C2orf66	Q6UXQ4	117 aa		13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	KIR2DL4	Q99706	377 aa		13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	MRPL16	Q9NX20	251 aa	Known RBP	13.88	□□□□□ -0.19
BRF1-215	ENST00000549655	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	13.87	□□□□□ -0.19
BRF1-215	ENST00000549655		M0R143	59 aa		13.87	□□□□□ -0.19
BRF1-215	ENST00000549655	HNRNPA3	P51991	378 aa	Known RBP	13.87	□□□□□ -0.19
BRF1-215	ENST00000549655	DEFB104A	Q8WTQ1	72 aa		13.87	□□□□□ -0.19
BRF1-215	ENST00000549655	SCGB3A1	Q96QR1	104 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 44 ms