RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 A0A1B0GXF2 115 aa12.47□□□□□ -0.41
CUX1-213ENST00000549414 A0A096LPF7 62 aa12.47□□□□□ -0.41
CUX1-213ENST00000549414 PAX2Q02962 417 aa12.47□□□□□ -0.41
CUX1-213ENST00000549414 MBD6Q96DN6 1003 aa12.46□□□□□ -0.41
CUX1-213ENST00000549414 A8MWV9 139 aa12.46□□□□□ -0.41
CUX1-213ENST00000549414 HLA-DRB4P13762 266 aa12.46□□□□□ -0.41
CUX1-213ENST00000549414 ZNF48Q96MX3 618 aaPredicted RBP12.46□□□□□ -0.41
CUX1-213ENST00000549414 HLA-DRB4X5D2U9 266 aa12.46□□□□□ -0.41
CUX1-213ENST00000549414 A6NDX4 124 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 RHODO00212 210 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 IGF1P05019 195 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 FOXI2Q6ZQN5 318 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 C20orf78Q9BR46 151 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 TP53TG3Q9ULZ0 132 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 SZT2Q5T011 3432 aa12.46□□□□□ -0.42
CUX1-213ENST00000549414 JPT2Q9H910 190 aa12.45□□□□□ -0.42
CUX1-213ENST00000549414 TRAV8-2A0A0B4J237 113 aa12.45□□□□□ -0.42
CUX1-213ENST00000549414 C9orf47Q6ZRZ4 202 aa12.45□□□□□ -0.42
CUX1-213ENST00000549414 K7EMI3 77 aa12.45□□□□□ -0.42
CUX1-213ENST00000549414 PRIMA1Q86XR5 153 aa12.45□□□□□ -0.42
CUX1-213ENST00000549414 CTRLP40313 264 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 F8P00451 2351 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 M0R2P5 195 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 LINC01545Q5VT33 79 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 C10orf99Q6UWK7 81 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 TP73-AS1Q9UF72 201 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 DAD1P61803 113 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 HIST2H2BDQ6DRA6 164 aa12.44□□□□□ -0.42
CUX1-213ENST00000549414 A0A1W2PPR1 153 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 CRIP1P50238 77 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 Q8N1Y9 231 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 MYMXA0A1B0GTQ4 84 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 C2orf70A6NJV1 201 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 ADAMTS20P59510 1910 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 SUMO4Q6EEV6 95 aa12.43□□□□□ -0.42
CUX1-213ENST00000549414 TSSC4Q9Y5U2 329 aaPredicted RBP12.43□□□□□ -0.42
CUX1-213ENST00000549414 VPS13AQ96RL7 3174 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 VWC2LB2RUY7 222 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 TNFRSF13BO14836 293 aaPredicted RBP12.42□□□□□ -0.42
CUX1-213ENST00000549414 MORN3Q6PF18 240 aaPredicted RBP12.42□□□□□ -0.42
CUX1-213ENST00000549414 ZNF493Q6ZR52 646 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 MGAM2Q2M2H8 2515 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 TMEM141Q96I45 108 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 U3KQE9 123 aa12.42□□□□□ -0.42
CUX1-213ENST00000549414 FSTL3O95633 263 aa12.41□□□□□ -0.42
CUX1-213ENST00000549414 MYCNOSP40205 109 aa12.41□□□□□ -0.42
CUX1-213ENST00000549414 EBI3Q14213 229 aa12.41□□□□□ -0.42
CUX1-213ENST00000549414 RPL39P62891 51 aaKnown RBP12.41□□□□□ -0.42
CUX1-213ENST00000549414 RASL10AQ92737 203 aa12.41□□□□□ -0.42
CUX1-213ENST00000549414 SMAD5-AS1Q9Y6J3 95 aa12.41□□□□□ -0.42
CUX1-213ENST00000549414 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.4□□□□□ -0.42
CUX1-213ENST00000549414 IGKV2-29A2NJV5 120 aaPredicted RBP12.4□□□□□ -0.42
CUX1-213ENST00000549414 AMTNQ6UX39 209 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 C9orf118A6NHY6 69 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 PSCAO43653 123 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 TMEM61Q8N0U2 210 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 NOP10Q9NPE3 64 aaKnown RBP12.4□□□□□ -0.42
CUX1-213ENST00000549414 MDFICQ9P1T7 246 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 ADAMTSL5Q6ZMM2 481 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 GPHB5Q86YW7 130 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 ZFAND3Q9H8U3 227 aa12.4□□□□□ -0.42
CUX1-213ENST00000549414 TRBV6-1A0A0K0K1D8 114 aa12.39□□□□□ -0.43
CUX1-213ENST00000549414 A0A1B0GV72 72 aa12.39□□□□□ -0.43
CUX1-213ENST00000549414 PAX4O43316 350 aa12.39□□□□□ -0.43
CUX1-213ENST00000549414 SRSF2Q01130 221 aaKnown RBP12.39□□□□□ -0.43
CUX1-213ENST00000549414 ANKRD17O75179 2603 aaKnown RBP12.39□□□□□ -0.43
CUX1-213ENST00000549414 GAGE6Q13070 117 aa12.39□□□□□ -0.43
CUX1-213ENST00000549414 C6orf226Q5I0X4 101 aa12.39□□□□□ -0.43
CUX1-213ENST00000549414 DLX4Q92988 240 aaPredicted RBP12.39□□□□□ -0.43
CUX1-213ENST00000549414 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.39□□□□□ -0.43
CUX1-213ENST00000549414 TRBV25-1A0A075B6N4 114 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 Q6ZS46 218 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 MGAQ8IWI9 3026 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 J3QQQ9 107 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 IGLV2-11P01706 119 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 CST9LQ9H4G1 147 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 CKS1BP61024 79 aa12.38□□□□□ -0.43
CUX1-213ENST00000549414 TET2Q6N021 2002 aaPredicted RBP12.38□□□□□ -0.43
CUX1-213ENST00000549414 K7EMT4 169 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 ETDBQ3ZM63 59 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 C20orf173Q96LM9 149 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 TTC32Q5I0X7 151 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 ESM1Q9NQ30 184 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 NDUFA12Q9UI09 145 aa12.37□□□□□ -0.43
CUX1-213ENST00000549414 SPINK8P0C7L1 97 aa12.36□□□□□ -0.43
CUX1-213ENST00000549414 CITED2Q99967 270 aaPredicted RBP12.36□□□□□ -0.43
CUX1-213ENST00000549414 A0A0J9YY99 117 aa12.36□□□□□ -0.43
CUX1-213ENST00000549414 ZFP2Q6ZN57 461 aa12.36□□□□□ -0.43
CUX1-213ENST00000549414 SCRT2Q9NQ03 307 aa12.36□□□□□ -0.43
CUX1-213ENST00000549414 Q8N6K4 173 aa12.36□□□□□ -0.43
CUX1-213ENST00000549414 CEND1Q8N111 149 aa12.35□□□□□ -0.43
CUX1-213ENST00000549414 C9JAW5 83 aa12.35□□□□□ -0.43
CUX1-213ENST00000549414 A0A0J9YXV3 536 aa12.35□□□□□ -0.43
CUX1-213ENST00000549414 SPAG8Q99932 426 aaPredicted RBP12.35□□□□□ -0.43
CUX1-213ENST00000549414 INAFM1C9JVW0 142 aa12.35□□□□□ -0.43
CUX1-213ENST00000549414 IGLC6P0CF74 106 aa12.35□□□□□ -0.43
CUX1-213ENST00000549414 H3BMG7 143 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 A0A0J9YX75 114 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 DEFB125Q8N687 156 aa12.34□□□□□ -0.43
CUX1-213ENST00000549414 GATD1Q8NB37 220 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms