RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PTH2Q96A98 100 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 RPH3ALQ9UNE2 315 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 TRAV8-1A0A0A6YYK1 113 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 GGTLC3B5MD39 225 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 C10orf91Q5T1B1 145 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 C11orf52Q96A22 123 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 NDFIP1Q9BT67 221 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 TM2D2Q9BX73 214 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 GTSF1LQ9H1H1 148 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 Q9HAA7 133 aa8.57□□□□□ -1.04
PTCH1-218ENST00000548945 CARHSP1Q9Y2V2 147 aaKnown RBP8.57□□□□□ -1.04
PTCH1-218ENST00000548945 MGST1P10620 155 aaKnown RBP8.56□□□□□ -1.04
PTCH1-218ENST00000548945 ADCYAP1P18509 176 aa8.56□□□□□ -1.04
PTCH1-218ENST00000548945 CEBPGP53567 150 aa8.56□□□□□ -1.04
PTCH1-218ENST00000548945 SUMO1P63165 101 aaKnown RBP8.56□□□□□ -1.04
PTCH1-218ENST00000548945 HAMPP81172 84 aa8.56□□□□□ -1.04
PTCH1-218ENST00000548945 C9orf85Q96MD7 179 aa8.56□□□□□ -1.04
PTCH1-218ENST00000548945 SCO2A0A1W2PP80 73 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 FAM74A3Q4VXF1 159 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 Q6ZSA8 131 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 C5orf17Q8NAS9 161 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 ATP6V0E2Q8NHE4 81 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 HIST1H2BAQ96A08 127 aa8.55□□□□□ -1.04
PTCH1-218ENST00000548945 K7EQM0 130 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 IGHV3-30P01768 117 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 IGHV3-33P01772 117 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 APOC3P02656 99 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 IGHV3-30-3P0DP02 117 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 IGHV3-30-5P0DP03 117 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 GNG5P63218 68 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 PIK3CD-AS1Q5SR53 167 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 SVBPQ8N300 66 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 SMIM7Q9BQ49 75 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 PARLQ9H300 379 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 FAM30AQ9NZY2 134 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 C11orf21Q9P2W6 132 aa8.54□□□□□ -1.04
PTCH1-218ENST00000548945 TRAV8-3A0A0A6YYJ7 113 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 ZNF727A8MUV8 499 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 J3QL48 77 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 PEX7O00628 323 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 GCGP01275 180 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 PLA2G1BP04054 148 aaKnown RBP8.53□□□□□ -1.04
PTCH1-218ENST00000548945 TCRAP04437 139 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 AKR1C3P42330 323 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 ZNF80P51504 273 aaPredicted RBP8.53□□□□□ -1.04
PTCH1-218ENST00000548945 ZNF674Q2M3X9 581 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 ZFP2Q6ZN57 461 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 EPDR1Q9UM22 224 aa8.53□□□□□ -1.04
PTCH1-218ENST00000548945 IGHV3-73A0A0B4J1V6 119 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 PGPEP1LA6NFU8 196 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 SMUG1Q53HV7 270 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 NAT8Q9UHE5 227 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 PSG8Q9UQ74 426 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 COX11Q9Y6N1 276 aa8.52□□□□□ -1.05
PTCH1-218ENST00000548945 A0A087WWC5 75 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 A8MWV9 139 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 SNAPINO95295 136 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 IGLV2-11P01706 119 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 S100A9P06702 114 aaKnown RBP8.51□□□□□ -1.05
PTCH1-218ENST00000548945 LINC00694P0DN24 101 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 RNASE3P12724 160 aaKnown RBP8.51□□□□□ -1.05
PTCH1-218ENST00000548945 RPL35P42766 123 aaKnown RBP8.51□□□□□ -1.05
PTCH1-218ENST00000548945 FLI1Q01543 452 aaPredicted RBP8.51□□□□□ -1.05
PTCH1-218ENST00000548945 PNRC1Q12796 327 aaPredicted RBP8.51□□□□□ -1.05
PTCH1-218ENST00000548945 TMEM75Q8N9X5 138 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 SGK494Q96LW2 274 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 DERL1Q9BUN8 251 aa8.51□□□□□ -1.05
PTCH1-218ENST00000548945 KRTAP29-1A8MX34 341 aaPredicted RBP8.5□□□□□ -1.05
PTCH1-218ENST00000548945 UBE2G1P62253 170 aa8.5□□□□□ -1.05
PTCH1-218ENST00000548945 WFDC2Q14508 124 aa8.5□□□□□ -1.05
PTCH1-218ENST00000548945 TMEM241Q24JQ0 296 aa8.5□□□□□ -1.05
PTCH1-218ENST00000548945 SAPCD1Q5SSQ6 148 aa8.5□□□□□ -1.05
PTCH1-218ENST00000548945 M0R036 132 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 GNG4P50150 75 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 LINC00528Q8N1L1 170 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 CLRN3Q8NCR9 226 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 DEFB104AQ8WTQ1 72 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 FMC1Q96HJ9 113 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 LINC00479Q96M42 142 aa8.49□□□□□ -1.05
PTCH1-218ENST00000548945 TRBV6-1A0A0K0K1D8 114 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 S100A4P26447 101 aaKnown RBP8.48□□□□□ -1.05
PTCH1-218ENST00000548945 RHEBQ15382 184 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 CENPWQ5EE01 88 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 PRNTQ86SH4 94 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 Q8N3U1 123 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 RMI2Q96E14 147 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 SMIM12Q96EX1 92 aa8.48□□□□□ -1.05
PTCH1-218ENST00000548945 TRBV20OR9-2A0A075B6H5 130 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 IGKV3D-20A0A0C4DH25 116 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 GAGE12JA6NER3 117 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 B4DEV8 164 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 RPL23P62829 140 aaKnown RBP8.47□□□□□ -1.05
PTCH1-218ENST00000548945 GAGE1Q13065 139 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 GAGE4Q13068 117 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 GAGE5Q13069 117 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 ADIRFQ15847 76 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 GAGE13Q4V321 117 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 UFSP1Q6NVU6 142 aa8.47□□□□□ -1.05
PTCH1-218ENST00000548945 DAZ4Q86SG3 579 aaKnown RBP8.47□□□□□ -1.05
PTCH1-218ENST00000548945 DAZ3Q9NR90 486 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms