RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 LYPD5Q6UWN5 251 aa9.45□□□□□ -0.9
PTCH1-217ENST00000548420 NEGR1Q7Z3B1 354 aa9.45□□□□□ -0.9
PTCH1-217ENST00000548420 LINC00528Q8N1L1 170 aa9.45□□□□□ -0.9
PTCH1-217ENST00000548420 GYPEP15421 78 aa9.44□□□□□ -0.9
PTCH1-217ENST00000548420 S100A4P26447 101 aaKnown RBP9.44□□□□□ -0.9
PTCH1-217ENST00000548420 RPL35P42766 123 aaKnown RBP9.44□□□□□ -0.9
PTCH1-217ENST00000548420 UFSP1Q6NVU6 142 aa9.44□□□□□ -0.9
PTCH1-217ENST00000548420 TMEM70Q9BUB7 260 aa9.44□□□□□ -0.9
PTCH1-217ENST00000548420 TRBV6-4A0A1B0GX49 114 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 M0R036 132 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 GAS8-AS1O95177 125 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 ARMS2P0C7Q2 107 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 ERVFC1-1P60608 527 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 MEF2BQ02080 365 aaPredicted RBP9.43□□□□□ -0.9
PTCH1-217ENST00000548420 ZFP2Q6ZN57 461 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 SLC25A29Q8N8R3 303 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 NHLRC2Q8NBF2 726 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 LYPD6BQ8NI32 183 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 DERL1Q9BUN8 251 aa9.43□□□□□ -0.9
PTCH1-217ENST00000548420 A0A087WTM6 91 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 GRIFINA4D1Z8 144 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 A8MWV9 139 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 H3BVH4 76 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 PDE6DO43924 150 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 IGLV2-8P01709 118 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 CXCL1P09341 107 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 MT1HL1P0DM35 61 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 BCL2P10415 239 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 PARLQ9H300 379 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 TNFRSF18Q9Y5U5 241 aa9.42□□□□□ -0.9
PTCH1-217ENST00000548420 LOC100131303A0A0U1RQF7 123 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 EREGO14944 169 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 IFNA1P01562 189 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 MGST1P10620 155 aaKnown RBP9.41□□□□□ -0.9
PTCH1-217ENST00000548420 SRIP30626 198 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 TAGLN2P37802 199 aaKnown RBP9.41□□□□□ -0.9
PTCH1-217ENST00000548420 TIRAPP58753 221 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 ALKAL2Q6UX46 152 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 SH2D6Q7Z4S9 175 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 PCNPQ8WW12 178 aaKnown RBP9.41□□□□□ -0.9
PTCH1-217ENST00000548420 JPT2Q9H910 190 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 VAX2Q9UIW0 290 aa9.41□□□□□ -0.9
PTCH1-217ENST00000548420 SIVA1O15304 175 aa9.4□□□□□ -0.9
PTCH1-217ENST00000548420 NXPH4O95158 308 aa9.4□□□□□ -0.9
PTCH1-217ENST00000548420 NKX2-5P52952 324 aaPredicted RBP9.4□□□□□ -0.9
PTCH1-217ENST00000548420 BLOC1S1P78537 153 aa9.4□□□□□ -0.9
PTCH1-217ENST00000548420 SMIM12Q96EX1 92 aa9.4□□□□□ -0.9
PTCH1-217ENST00000548420 SSBP4Q9BWG4 385 aaPredicted RBP9.4□□□□□ -0.9
PTCH1-217ENST00000548420 SAMD10Q9BYL1 202 aa9.4□□□□□ -0.9
PTCH1-217ENST00000548420 TRBV20OR9-2A0A075B6H5 130 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 TMSB15BA0A087X1C1 80 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 IGHV3-73A0A0B4J1V6 119 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 RPL19P84098 196 aaKnown RBP9.39□□□□□ -0.91
PTCH1-217ENST00000548420 RHOHQ15669 191 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 CENPWQ5EE01 88 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 SFRP2Q96HF1 295 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 PRADC1Q9BSG0 188 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 PHLDA3Q9Y5J5 127 aa9.39□□□□□ -0.91
PTCH1-217ENST00000548420 RAB19A4D1S5 217 aa9.38□□□□□ -0.91
PTCH1-217ENST00000548420 C19orf71A6NCJ1 209 aa9.38□□□□□ -0.91
PTCH1-217ENST00000548420 SNAI2O43623 268 aa9.38□□□□□ -0.91
PTCH1-217ENST00000548420 CRYGDP07320 174 aa9.38□□□□□ -0.91
PTCH1-217ENST00000548420 OR5AL1P0C617 328 aa9.38□□□□□ -0.91
PTCH1-217ENST00000548420 RHODO00212 210 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 LINC00694P0DN24 101 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 LELP1Q5T871 98 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 ZFP82Q8N141 532 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 MED9Q9NWA0 146 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 MUC2Q02817 5179 aa9.37□□□□□ -0.91
PTCH1-217ENST00000548420 K7EP13 123 aa9.36□□□□□ -0.91
PTCH1-217ENST00000548420 GNG4P50150 75 aa9.36□□□□□ -0.91
PTCH1-217ENST00000548420 PRR27Q6MZM9 219 aa9.36□□□□□ -0.91
PTCH1-217ENST00000548420 Q9UF83 564 aa9.36□□□□□ -0.91
PTCH1-217ENST00000548420 RBFOX3A6NFN3 312 aa9.35□□□□□ -0.91
PTCH1-217ENST00000548420 M0R381 172 aa9.35□□□□□ -0.91
PTCH1-217ENST00000548420 NDUFS6O75380 124 aaKnown RBP9.35□□□□□ -0.91
PTCH1-217ENST00000548420 WFDC10BQ8IUB3 73 aa9.35□□□□□ -0.91
PTCH1-217ENST00000548420 C14orf178Q8N769 122 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-217ENST00000548420 TMEM250H0YL14 139 aa9.34□□□□□ -0.91
PTCH1-217ENST00000548420 OR10AG1Q8NH19 301 aa9.34□□□□□ -0.91
PTCH1-217ENST00000548420 ATP6V0E2Q8NHE4 81 aa9.34□□□□□ -0.91
PTCH1-217ENST00000548420 GTSF1LQ9H1H1 148 aa9.34□□□□□ -0.91
PTCH1-217ENST00000548420 A0A087WWL8 130 aa9.33□□□□□ -0.92
PTCH1-217ENST00000548420 IGLC6P0CF74 106 aa9.33□□□□□ -0.92
PTCH1-217ENST00000548420 DAZAP1Q96EP5 407 aaKnown RBP9.33□□□□□ -0.92
PTCH1-217ENST00000548420 BIN3Q9NQY0 253 aa9.33□□□□□ -0.92
PTCH1-217ENST00000548420 LY96Q9Y6Y9 160 aa9.33□□□□□ -0.92
PTCH1-217ENST00000548420 TRAV9-2A0A087WT02 112 aa9.32□□□□□ -0.92
PTCH1-217ENST00000548420 RPS20P60866 119 aaKnown RBP9.32□□□□□ -0.92
PTCH1-217ENST00000548420 OR2D3Q8NGH3 330 aa9.32□□□□□ -0.92
PTCH1-217ENST00000548420 OCC1Q8TAD7 63 aa9.32□□□□□ -0.92
PTCH1-217ENST00000548420 KIF25-AS1Q9Y6Z4 181 aa9.32□□□□□ -0.92
PTCH1-217ENST00000548420 IGHV3-38A0A0C4DH36 116 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 TRBV10-1A0A0K0K1A3 114 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 K7EN84 100 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 GZMBP10144 247 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 RAB4BP61018 213 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 LINC01556Q5JQF7 62 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 FAM74A4Q5TZK3 123 aa9.31□□□□□ -0.92
PTCH1-217ENST00000548420 NUDT10Q8NFP7 164 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms