RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 MDFICQ9P1T7 246 aa11.79□□□□□ -0.52
LDLR-204ENST00000545707 RRN3P1Q2M238 152 aa11.79□□□□□ -0.52
LDLR-204ENST00000545707 PRORYQ9H606 182 aa11.79□□□□□ -0.52
LDLR-204ENST00000545707 IGLV4-69A0A075B6H9 119 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 NXPH4O95158 308 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 IGHV4-59P01825 116 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 POLR2KP53803 58 aaKnown RBP11.78□□□□□ -0.52
LDLR-204ENST00000545707 CFHR3Q02985 330 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 ZNF256Q9Y2P7 627 aaPredicted RBP11.78□□□□□ -0.52
LDLR-204ENST00000545707 MYO18BQ8IUG5 2567 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 SDHAF1A6NFY7 115 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 POM121L12Q8N7R1 296 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 DUX5Q96PT3 197 aa11.78□□□□□ -0.52
LDLR-204ENST00000545707 IGIPA6NJ69 53 aa11.77□□□□□ -0.52
LDLR-204ENST00000545707 BRI3O95415 125 aa11.77□□□□□ -0.52
LDLR-204ENST00000545707 ID1P41134 155 aa11.77□□□□□ -0.52
LDLR-204ENST00000545707 ETDBQ3ZM63 59 aa11.77□□□□□ -0.52
LDLR-204ENST00000545707 MORN3Q6PF18 240 aaPredicted RBP11.77□□□□□ -0.52
LDLR-204ENST00000545707 OPRPNQ99935 248 aaPredicted RBP11.77□□□□□ -0.52
LDLR-204ENST00000545707 MXRA5Q9NR99 2828 aa11.77□□□□□ -0.53
LDLR-204ENST00000545707 IGHV4OR15-8A0A075B7B6 117 aa11.77□□□□□ -0.53
LDLR-204ENST00000545707 A0A087WW49 117 aa11.77□□□□□ -0.53
LDLR-204ENST00000545707 HOXA3O43365 443 aaPredicted RBP11.77□□□□□ -0.53
LDLR-204ENST00000545707 COX6B1P14854 86 aa11.77□□□□□ -0.53
LDLR-204ENST00000545707 SRSF9Q13242 221 aaKnown RBP eCLIP11.77□□□□□ -0.53
LDLR-204ENST00000545707 PGPEP1Q9NXJ5 209 aa11.77□□□□□ -0.53
LDLR-204ENST00000545707 PPP1R17O96001 155 aa11.76□□□□□ -0.53
LDLR-204ENST00000545707 MAPK1IP1LQ8NDC0 245 aa11.76□□□□□ -0.53
LDLR-204ENST00000545707 IGSF10Q6WRI0 2623 aa11.76□□□□□ -0.53
LDLR-204ENST00000545707 TRBV7-9A0A0J9YWB2 115 aa11.76□□□□□ -0.53
LDLR-204ENST00000545707 SPANXB1Q9NS25 103 aaPredicted RBP11.76□□□□□ -0.53
LDLR-204ENST00000545707 SPINK13Q1W4C9 94 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 KIR2DL4Q99706 377 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 CUBNO60494 3623 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 DOPEY1Q5JWR5 2465 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 A0A1B0GWB2 263 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 LINC01549A6NIU2 74 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 VCYO14598 125 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 PSMB8P28062 276 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 TSPEAR-AS2P59090 65 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 DEFB112Q30KQ8 113 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 TMEM170BQ5T4T1 132 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 Q8N1Y9 231 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 ZNRF2Q8NHG8 242 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 PIEZO1Q92508 2521 aa11.75□□□□□ -0.53
LDLR-204ENST00000545707 F8W1H4 67 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 K7EMT4 169 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 PMVKQ15126 192 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 ZNF56Q15929 161 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 MRPL16Q9NX20 251 aaKnown RBP11.74□□□□□ -0.53
LDLR-204ENST00000545707 IGHV3-16A0A0C4DH30 117 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 APOMO95445 188 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 GAGE13Q4V321 117 aa11.74□□□□□ -0.53
LDLR-204ENST00000545707 LINC01619G3V211 115 aa11.73□□□□□ -0.53
LDLR-204ENST00000545707 NDUFS8O00217 210 aa11.73□□□□□ -0.53
LDLR-204ENST00000545707 INSL3P51460 131 aa11.73□□□□□ -0.53
LDLR-204ENST00000545707 SYNJ2BPP57105 145 aa11.73□□□□□ -0.53
LDLR-204ENST00000545707 A0A0J9YX75 114 aa11.72□□□□□ -0.53
LDLR-204ENST00000545707 GTSF1LQ9H1H1 148 aa11.72□□□□□ -0.53
LDLR-204ENST00000545707 PRO0461Q9UI25 63 aa11.72□□□□□ -0.53
LDLR-204ENST00000545707 TSSC4Q9Y5U2 329 aaPredicted RBP11.72□□□□□ -0.53
LDLR-204ENST00000545707 CACNA1AO00555 2505 aa11.72□□□□□ -0.53
LDLR-204ENST00000545707 B4DSR2 109 aa11.71□□□□□ -0.53
LDLR-204ENST00000545707 HTN1P15515 57 aa11.71□□□□□ -0.53
LDLR-204ENST00000545707 FBN2P35556 2912 aa11.71□□□□□ -0.53
LDLR-204ENST00000545707 LOC107984156A0A0G2JMH3 177 aa11.71□□□□□ -0.54
LDLR-204ENST00000545707 ARL17AQ8IVW1 177 aa11.71□□□□□ -0.54
LDLR-204ENST00000545707 C9orf85Q96MD7 179 aa11.71□□□□□ -0.54
LDLR-204ENST00000545707 SPAG8Q99932 426 aaPredicted RBP11.71□□□□□ -0.54
LDLR-204ENST00000545707 A0A0J9YY99 117 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 TRBV27A0A0K0K1C4 114 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 TMEM238C9JI98 176 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 M0QY20 66 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 LGALS9O00182 355 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 PRM2P04554 102 aa11.7□□□□□ -0.54
LDLR-204ENST00000545707 RPL32P62910 135 aaKnown RBP11.7□□□□□ -0.54
LDLR-204ENST00000545707 IGHV3-64A0A075B6Q5 118 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 TSPAN13O95857 204 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 SNRPD3P62318 126 aaKnown RBP11.69□□□□□ -0.54
LDLR-204ENST00000545707 IGHV3-73A0A0B4J1V6 119 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 K7EQG2 157 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 P0DMU3 169 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 FAM231AP0DMU4 169 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 FAM231CP0DMU5 169 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 UBE2D1P51668 147 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 HERVK_113P61574 105 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 ZNF876PQ49A33 203 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 TMEM141Q96I45 108 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 ACACBO00763 2458 aa11.69□□□□□ -0.54
LDLR-204ENST00000545707 IGHV1OR15-1A0A075B7D0 117 aa11.68□□□□□ -0.54
LDLR-204ENST00000545707 TIMM17AQ99595 171 aa11.68□□□□□ -0.54
LDLR-204ENST00000545707 PSMB2P49721 201 aa11.68□□□□□ -0.54
LDLR-204ENST00000545707 ZFYVE26Q68DK2 2539 aa11.68□□□□□ -0.54
LDLR-204ENST00000545707 FAM208BQ5VWN6 2430 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 TMEM238LA0A1B0GVL6 79 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 A6NJY4 79 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 TGFAP01135 160 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 AZU1P20160 251 aa11.67□□□□□ -0.54
LDLR-204ENST00000545707 ANKRD17O75179 2603 aaKnown RBP11.67□□□□□ -0.54
LDLR-204ENST00000545707 TRBV6-5A0A0K0K1A5 114 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms