RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF815PA8K554 130 aa11.27□□□□□ -0.6
USP28-214ENST00000545540 APOMO95445 188 aa11.27□□□□□ -0.6
USP28-214ENST00000545540 SPINK13Q1W4C9 94 aa11.27□□□□□ -0.6
USP28-214ENST00000545540 ACANP16112 2415 aa11.27□□□□□ -0.61
USP28-214ENST00000545540 G3V4G9 280 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 OVOL1O14753 267 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 INSL3P51460 131 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 NEXN-AS1Q8NBZ9 246 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 MRAP2Q96G30 205 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 SMPXQ9UHP9 88 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 SRSF9Q13242 221 aaKnown RBP eCLIP11.26□□□□□ -0.61
USP28-214ENST00000545540 TOMM6Q96B49 74 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 MRPL53Q96EL3 112 aaKnown RBP11.26□□□□□ -0.61
USP28-214ENST00000545540 DAZ1Q9NQZ3 744 aaKnown RBP11.26□□□□□ -0.61
USP28-214ENST00000545540 IGHV4-4A0A075B6R2 117 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 IGHG2P01859 326 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 LGALS1P09382 135 aaKnown RBP11.26□□□□□ -0.61
USP28-214ENST00000545540 CLEC2AQ6UVW9 174 aa11.26□□□□□ -0.61
USP28-214ENST00000545540 AKAP9Q99996 3911 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 MYMXA0A1B0GTQ4 84 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 C11orf86A6NJI1 115 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 TSHBP01222 138 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 PLNP26678 52 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 SUMO4Q6EEV6 95 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 HIGD1BQ9P298 99 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 ORMDL2Q53FV1 153 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 TMEM170BQ5T4T1 132 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 GTSF1LQ9H1H1 148 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 SYNJ2BPP57105 145 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 DUX3Q96PT4 197 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 TM2D2Q9BX73 214 aa11.25□□□□□ -0.61
USP28-214ENST00000545540 CRYGDP07320 174 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 C10orf105Q8TEF2 133 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 LOC107984156A0A0G2JMH3 177 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 A6NDX4 124 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 DEFB136Q30KP8 78 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 ARL17AQ8IVW1 177 aa11.24□□□□□ -0.61
USP28-214ENST00000545540 ZNF56Q15929 161 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 MSMBP08118 114 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 DEFB112Q30KQ8 113 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 PGPEP1Q9NXJ5 209 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 SDHAF1A6NFY7 115 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 LINC00315P59091 139 aa11.23□□□□□ -0.61
USP28-214ENST00000545540 RNASE13Q5GAN3 156 aaKnown RBP11.23□□□□□ -0.61
USP28-214ENST00000545540 KNCNA6PVL3 124 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 P0DMU3 169 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 FAM231AP0DMU4 169 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 FAM231CP0DMU5 169 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 OR5A1Q8NGJ0 315 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 Q9UF83 564 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 LINC01549A6NIU2 74 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 ZFP2Q6ZN57 461 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 PROK1P58294 105 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 Q8N1Y9 231 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 MRPL16Q9NX20 251 aaKnown RBP11.22□□□□□ -0.61
USP28-214ENST00000545540 ZNF580Q9UK33 172 aa11.22□□□□□ -0.61
USP28-214ENST00000545540 TRBV7-3A0A075B6L6 115 aa11.21□□□□□ -0.61
USP28-214ENST00000545540 E9PLD3 99 aa11.21□□□□□ -0.61
USP28-214ENST00000545540 TSPEAR-AS2P59090 65 aa11.21□□□□□ -0.61
USP28-214ENST00000545540 FOXI2Q6ZQN5 318 aa11.21□□□□□ -0.61
USP28-214ENST00000545540 DCANP1Q8TF63 244 aa11.21□□□□□ -0.61
USP28-214ENST00000545540 H7C2G1 150 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 KLK9Q2XQG4 91 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 C18orf65Q6ZTR6 163 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 SMAGPQ0VAQ4 97 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 ZNF418Q8TF45 676 aaPredicted RBP11.21□□□□□ -0.62
USP28-214ENST00000545540 PTH2Q96A98 100 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 USMG5Q96IX5 58 aa11.21□□□□□ -0.62
USP28-214ENST00000545540 ADARB2-AS1A8MUL3 147 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 C20orf78Q9BR46 151 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 KIF25-AS1Q9Y6Z4 181 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 PRSS47A8MTI9 375 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 PRB1P04280 392 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 CEMP1Q6PRD7 247 aaPredicted RBP11.2□□□□□ -0.62
USP28-214ENST00000545540 TSSC4Q9Y5U2 329 aaPredicted RBP11.2□□□□□ -0.62
USP28-214ENST00000545540 NBPF19A0A087WUL8 3843 aa11.2□□□□□ -0.62
USP28-214ENST00000545540 LENEPQ9Y5L5 61 aa11.19□□□□□ -0.62
USP28-214ENST00000545540 HOXA3O43365 443 aaPredicted RBP11.19□□□□□ -0.62
USP28-214ENST00000545540 ZNRF2Q8NHG8 242 aa11.19□□□□□ -0.62
USP28-214ENST00000545540 FAM19A4Q96LR4 140 aa11.19□□□□□ -0.62
USP28-214ENST00000545540 MORN3Q6PF18 240 aaPredicted RBP11.19□□□□□ -0.62
USP28-214ENST00000545540 IGLV4-69A0A075B6H9 119 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 BEX4Q9NWD9 120 aaPredicted RBP11.18□□□□□ -0.62
USP28-214ENST00000545540 TRAV12-1A0A0B4J245 112 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 IGLV1-40P01703 118 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 PSMB2P49721 201 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 RRN3P1Q2M238 152 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 KIR2DL4Q99706 377 aa11.18□□□□□ -0.62
USP28-214ENST00000545540 A0A1B0GWB2 263 aa11.17□□□□□ -0.62
USP28-214ENST00000545540 ZNF876PQ49A33 203 aa11.17□□□□□ -0.62
USP28-214ENST00000545540 KLLNB2CW77 178 aa11.17□□□□□ -0.62
USP28-214ENST00000545540 FN1P02751 2386 aaKnown RBP11.17□□□□□ -0.62
USP28-214ENST00000545540 USP24Q9UPU5 2620 aa11.17□□□□□ -0.62
USP28-214ENST00000545540 GAGE13Q4V321 117 aa11.16□□□□□ -0.62
USP28-214ENST00000545540 SPAG8Q99932 426 aaPredicted RBP11.16□□□□□ -0.62
USP28-214ENST00000545540 IGIPA6NJ69 53 aa11.16□□□□□ -0.62
USP28-214ENST00000545540 ID1P41134 155 aa11.16□□□□□ -0.62
USP28-214ENST00000545540 KHDC1LQ5JSQ8 128 aa11.16□□□□□ -0.62
USP28-214ENST00000545540 RAX2Q96IS3 184 aa11.16□□□□□ -0.62
USP28-214ENST00000545540 SPANXB1Q9NS25 103 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 292.1 ms