RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 HOXA5P20719 270 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 S100A2P29034 98 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 DAZ2Q13117 558 aaKnown RBP5.33□□□□□ -1.56
VPS53-205ENST00000541903 ZNF56Q15929 161 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 JPT2Q9H910 190 aa5.33□□□□□ -1.56
VPS53-205ENST00000541903 TRAV26-2A0A0B4J265 109 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 TNFRSF6BO95407 300 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 PPP1R17O96001 155 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 NPYP01303 97 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 EMP1P54849 157 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 LGALS9BQ3B8N2 356 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 PDZD11Q5EBL8 140 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 SUMO4Q6EEV6 95 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 RNASEKQ6P5S7 137 aaKnown RBP5.32□□□□□ -1.56
VPS53-205ENST00000541903 Q6ZWC4 215 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 POM121L12Q8N7R1 296 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 OR11H2Q8NH07 326 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 RASL10AQ92737 203 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 SAMD10Q9BYL1 202 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 MAP1LC3AQ9H492 121 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 NOP10Q9NPE3 64 aaKnown RBP5.32□□□□□ -1.56
VPS53-205ENST00000541903 KIF25-AS1Q9Y6Z4 181 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 X6R8D5 127 aa5.32□□□□□ -1.56
VPS53-205ENST00000541903 DNHD1Q96M86 4753 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 LOC105371267A0A1B0GV96 52 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 PLAC8L1A1L4L8 177 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 H7C1H1 209 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 RS1O15537 224 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 HSBP1O75506 76 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 CRYGDP07320 174 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 LINC00315P59091 139 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 KPRPQ5T749 579 aaPredicted RBP5.31□□□□□ -1.56
VPS53-205ENST00000541903 Q6ZTI0 123 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 FA2HQ7L5A8 372 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 HIST3H2BBQ8N257 126 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 OR4C5Q8NGB2 326 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 PRSS3P2Q8NHM4 247 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 CHCHD1Q96BP2 118 aaKnown RBP5.31□□□□□ -1.56
VPS53-205ENST00000541903 RNF183Q96D59 192 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 OVOL2Q9BRP0 275 aa5.31□□□□□ -1.56
VPS53-205ENST00000541903 FBN1P35555 2871 aaKnown RBP5.31□□□□□ -1.56
VPS53-205ENST00000541903 COL6A5A8TX70 2615 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 STAB1Q9NY15 2570 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 TRGV2A0A075B6R0 118 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 IGHV3-73A0A0B4J1V6 119 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 TRAV4A0A0B4J268 109 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 LOC389332A0A1B0GUA5 103 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAGE12BA1L429 117 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAGE7O76087 117 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAS8-AS1O95177 125 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAGE12FP0CL80 117 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAGE12GP0CL81 117 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GAGE12IP0CL82 117 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 ESDP10768 282 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 MIFP14174 115 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 GATA1P15976 413 aaPredicted RBP5.3□□□□□ -1.56
VPS53-205ENST00000541903 PMCHP20382 165 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 AKR1D1P51857 326 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 CFAP126Q5VTH2 177 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 ZFP2Q6ZN57 461 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 NIT1Q86X76 327 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 NRACQ8N912 160 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 TMEM18Q96B42 140 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 C20orf78Q9BR46 151 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 NXT2Q9NPJ8 142 aaKnown RBP5.3□□□□□ -1.56
VPS53-205ENST00000541903 TP53TG1Q9Y2A0 90 aa5.3□□□□□ -1.56
VPS53-205ENST00000541903 IGHV4-28A0A0C4DH34 117 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 CIDEAO60543 219 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 LINC00614P0C842 121 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 FABP4P15090 132 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 AMTP48728 403 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 LINC00310P59036 64 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 SUMO2P61956 95 aaKnown RBP5.29□□□□□ -1.56
VPS53-205ENST00000541903 KRTAP21-3Q3LHN1 58 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 UFSP1Q6NVU6 142 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 RPL39LQ96EH5 51 aaKnown RBP5.29□□□□□ -1.56
VPS53-205ENST00000541903 HIST1H2BLQ99880 126 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 SMIM2Q9BVW6 85 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 ST20Q9HBF5 79 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 AP5S1Q9NUS5 200 aa5.29□□□□□ -1.56
VPS53-205ENST00000541903 TEX48A0A1B0GUV7 120 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 IFITM10A6NMD0 228 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 LYRM9A8MSI8 78 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 K7EIL1 84 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 M0QY20 66 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 NUPR1O60356 82 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 IGHV3-53P01767 116 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 PRB2P02812 416 aaPredicted RBP5.28□□□□□ -1.56
VPS53-205ENST00000541903 DEFB130BP0DP73 79 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 DEFB130AP0DP74 79 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 IFI27P40305 119 aaPredicted RBP5.28□□□□□ -1.56
VPS53-205ENST00000541903 FAM222AQ5U5X8 452 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 Q8N8P6 123 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 Q8NAQ8 132 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 URB1-AS1Q96HZ7 61 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 PACRGQ96M98 296 aaPredicted RBP5.28□□□□□ -1.56
VPS53-205ENST00000541903 EDA2RQ9HAV5 297 aa5.28□□□□□ -1.56
VPS53-205ENST00000541903 IGHV1-24A0A0C4DH33 117 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 TRBV6-5A0A0K0K1A5 114 aa5.27□□□□□ -1.57
VPS53-205ENST00000541903 PRSS47A8MTI9 375 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms