RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 NACAE9PAV3 2078 aa10.68□□□□□ -0.7
CLIP1-216ENST00000541410 SMIM17P0DL12 118 aa10.68□□□□□ -0.7
CLIP1-216ENST00000541410 PET117Q6UWS5 81 aa10.68□□□□□ -0.7
CLIP1-216ENST00000541410 MRAP2Q96G30 205 aa10.68□□□□□ -0.7
CLIP1-216ENST00000541410 SPAG8Q99932 426 aaPredicted RBP10.68□□□□□ -0.7
CLIP1-216ENST00000541410 C20orf202A1L168 122 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 LINC00315P59091 139 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 CTAG1AP78358 180 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 C9orf85Q96MD7 179 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 KIF25-AS1Q9Y6Z4 181 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 IGLC3P0DOY3 106 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 IFI27L1Q96BM0 104 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 WFDC10AQ9H1F0 79 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 XCL2Q9UBD3 114 aa10.67□□□□□ -0.7
CLIP1-216ENST00000541410 NXPH4O95158 308 aa10.66□□□□□ -0.7
CLIP1-216ENST00000541410 LINC01545Q5VT33 79 aa10.66□□□□□ -0.7
CLIP1-216ENST00000541410 IGHV3OR16-12A0A075B7B8 117 aa10.66□□□□□ -0.7
CLIP1-216ENST00000541410 FCER1GP30273 86 aa10.66□□□□□ -0.7
CLIP1-216ENST00000541410 SUMO2P61956 95 aaKnown RBP10.66□□□□□ -0.7
CLIP1-216ENST00000541410 TRAV2A0A0B4J234 112 aa10.65□□□□□ -0.7
CLIP1-216ENST00000541410 ZNF876PQ49A33 203 aa10.65□□□□□ -0.7
CLIP1-216ENST00000541410 SUMO4Q6EEV6 95 aa10.65□□□□□ -0.7
CLIP1-216ENST00000541410 SMIM2Q9BVW6 85 aa10.65□□□□□ -0.7
CLIP1-216ENST00000541410 SNHG12Q9BXW3 62 aa10.65□□□□□ -0.7
CLIP1-216ENST00000541410 IGHV3-73A0A0B4J1V6 119 aa10.65□□□□□ -0.71
CLIP1-216ENST00000541410 LAGE3Q14657 143 aa10.65□□□□□ -0.71
CLIP1-216ENST00000541410 Q6ZN92 141 aa10.65□□□□□ -0.71
CLIP1-216ENST00000541410 VWFP04275 2813 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 LINC01546A6NGU7 62 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 NDUFA7O95182 113 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 JMJD8Q96S16 334 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 LINC01587Q99440 93 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 DKK2Q9UBU2 259 aa10.64□□□□□ -0.71
CLIP1-216ENST00000541410 ZNF56Q15929 161 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 BATFQ16520 125 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 STHQ8IWL8 128 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 TENM1Q9UKZ4 2725 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 OR11H12B2RN74 326 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 NUDT3O95989 172 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 CSTL1Q9H114 145 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 F8P00451 2351 aa10.63□□□□□ -0.71
CLIP1-216ENST00000541410 A8MTW9 85 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 PRSS1P07477 247 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 UQCR10Q9UDW1 63 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 GOLT1BQ9Y3E0 138 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 TRGV11A0A075B6L2 103 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 CRYGDP07320 174 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 STPG4Q8N801 248 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 SYT8Q8NBV8 401 aa10.62□□□□□ -0.71
CLIP1-216ENST00000541410 PRSS47A8MTI9 375 aa10.61□□□□□ -0.71
CLIP1-216ENST00000541410 TRAV25A0A0B4J276 109 aa10.61□□□□□ -0.71
CLIP1-216ENST00000541410 HSBP1L1C9JCN9 74 aa10.61□□□□□ -0.71
CLIP1-216ENST00000541410 HNRNPA3P51991 378 aaKnown RBP10.61□□□□□ -0.71
CLIP1-216ENST00000541410 SPATA3Q8NHX4 192 aa10.61□□□□□ -0.71
CLIP1-216ENST00000541410 TMEM208Q9BTX3 173 aa10.61□□□□□ -0.71
CLIP1-216ENST00000541410 ATRQ13535 2644 aa10.6□□□□□ -0.71
CLIP1-216ENST00000541410 A0A1B0GV90 55 aa10.6□□□□□ -0.71
CLIP1-216ENST00000541410 AZU1P20160 251 aa10.6□□□□□ -0.71
CLIP1-216ENST00000541410 C20orf78Q9BR46 151 aa10.6□□□□□ -0.71
CLIP1-216ENST00000541410 M0R143 59 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 INSP01308 110 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 PF4P02776 101 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 RPL35AP18077 110 aaKnown RBP10.59□□□□□ -0.71
CLIP1-216ENST00000541410 DEFB125Q8N687 156 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 POM121L12Q8N7R1 296 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 ST20Q9HBF5 79 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 IGLV1-51P01701 117 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 P0DMU3 169 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 FAM231AP0DMU4 169 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 FAM231CP0DMU5 169 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 LGALS9BQ3B8N2 356 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 ANKRD39Q53RE8 183 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 LGALS9CQ6DKI2 356 aa10.59□□□□□ -0.71
CLIP1-216ENST00000541410 MORN3Q6PF18 240 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-216ENST00000541410 TRPT1Q86TN4 253 aaKnown RBP10.58□□□□□ -0.72
CLIP1-216ENST00000541410 MRPL16Q9NX20 251 aaKnown RBP10.58□□□□□ -0.72
CLIP1-216ENST00000541410 SDHAF1A6NFY7 115 aa10.58□□□□□ -0.72
CLIP1-216ENST00000541410 Q9UF83 564 aa10.58□□□□□ -0.72
CLIP1-216ENST00000541410 M0QY20 66 aa10.57□□□□□ -0.72
CLIP1-216ENST00000541410 ODF1Q14990 250 aa10.57□□□□□ -0.72
CLIP1-216ENST00000541410 C1orf158Q8N1D5 194 aa10.57□□□□□ -0.72
CLIP1-216ENST00000541410 C2orf66Q6UXQ4 117 aa10.57□□□□□ -0.72
CLIP1-216ENST00000541410 NDUFA11Q86Y39 141 aa10.56□□□□□ -0.72
CLIP1-216ENST00000541410 C11orf72Q8NBR9 251 aa10.56□□□□□ -0.72
CLIP1-216ENST00000541410 SCGB3A1Q96QR1 104 aa10.56□□□□□ -0.72
CLIP1-216ENST00000541410 POLR2KP53803 58 aaKnown RBP10.55□□□□□ -0.72
CLIP1-216ENST00000541410 RPL39P62891 51 aaKnown RBP10.55□□□□□ -0.72
CLIP1-216ENST00000541410 ZNF415Q09FC8 603 aa10.55□□□□□ -0.72
CLIP1-216ENST00000541410 ORMDL2Q53FV1 153 aa10.55□□□□□ -0.72
CLIP1-216ENST00000541410 M0R2P5 195 aa10.55□□□□□ -0.72
CLIP1-216ENST00000541410 HINT1P49773 126 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-216ENST00000541410 CRLF1O75462 422 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 ATP5LO75964 103 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 PPP1R17O96001 155 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 Q6ZSN1 163 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 C19orf73Q9NVV2 129 aa10.54□□□□□ -0.72
CLIP1-216ENST00000541410 MRPL35Q9NZE8 188 aaKnown RBP10.54□□□□□ -0.72
CLIP1-216ENST00000541410 TEP1Q99973 2627 aaKnown RBP10.54□□□□□ -0.72
CLIP1-216ENST00000541410 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-216ENST00000541410 ZC2HC1BQ5TFG8 222 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms