RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PIP4P1Q86T03 277 aa9.77□□□□□ -0.85
SFSWAP-209ENST00000540469 IGHV4-4A0A075B6R2 117 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 G3V318 75 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 C9orf47Q6ZRZ4 202 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 LINC01560Q8TB33 94 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 EEF1AKMT3Q96AZ1 226 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 GNRH2O43555 120 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 SLC25A29Q8N8R3 303 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 ATP6V0E1O15342 81 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 TSPEAR-AS2P59090 65 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 ATXN8Q156A1 80 aa9.76□□□□□ -0.85
SFSWAP-209ENST00000540469 A0A087WWL8 130 aa9.75□□□□□ -0.85
SFSWAP-209ENST00000540469 RHODO00212 210 aa9.75□□□□□ -0.85
SFSWAP-209ENST00000540469 Q8N1Y9 231 aa9.75□□□□□ -0.85
SFSWAP-209ENST00000540469 C15orf53Q8NAA6 179 aa9.75□□□□□ -0.85
SFSWAP-209ENST00000540469 TEX49A0A1B0GTD5 131 aa9.74□□□□□ -0.85
SFSWAP-209ENST00000540469 CRYGDP07320 174 aa9.74□□□□□ -0.85
SFSWAP-209ENST00000540469 IGLV4-69A0A075B6H9 119 aa9.74□□□□□ -0.85
SFSWAP-209ENST00000540469 FAM110DQ8TAY7 271 aaPredicted RBP9.74□□□□□ -0.85
SFSWAP-209ENST00000540469 PPDPFQ9H3Y8 114 aa9.74□□□□□ -0.85
SFSWAP-209ENST00000540469 C9orf139Q6ZV77 190 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 SVEP1Q4LDE5 3571 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 F6UB75 175 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 LINC01620Q4KN68 170 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 IGFL3Q6UXB1 125 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 MUSTN1Q8IVN3 82 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 MRPL53Q96EL3 112 aaKnown RBP9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 LINC00527Q9UJ94 153 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 CLPSL1A2RUU4 121 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 H3BMM0 161 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 SRD5A1P18405 259 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 C2orf82Q6UX34 121 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 SBSPONQ8IVN8 264 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 UBE2WQ96B02 151 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 LINC00477Q96M19 166 aa9.73□□□□□ -0.85
SFSWAP-209ENST00000540469 IGHV1-69DA0A0B4J2H0 117 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 VCYO14598 125 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 IGHV3-33P01772 117 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 ATP5J2P56134 94 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 CCDC140Q96MF4 163 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 FAM110AQ9BQ89 295 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 SDHAF1A6NFY7 115 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 JPT2Q9H910 190 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 Q8N9W7 124 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 TMEM141Q96I45 108 aa9.72□□□□□ -0.85
SFSWAP-209ENST00000540469 TSHBP01222 138 aa9.71□□□□□ -0.85
SFSWAP-209ENST00000540469 C20orf173Q96LM9 149 aa9.71□□□□□ -0.85
SFSWAP-209ENST00000540469 OPRPNQ99935 248 aaPredicted RBP9.71□□□□□ -0.85
SFSWAP-209ENST00000540469 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 ADARB2-AS1A8MUL3 147 aa9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 M0R1W7 72 aa9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 ZNF56Q15929 161 aa9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 MEIG1Q5JSS6 88 aa9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 ZNRF2Q8NHG8 242 aa9.71□□□□□ -0.86
SFSWAP-209ENST00000540469 NPC2P61916 151 aa9.7□□□□□ -0.86
SFSWAP-209ENST00000540469 LY6G5BQ8NDX9 201 aa9.7□□□□□ -0.86
SFSWAP-209ENST00000540469 ZFAND2AQ8N6M9 145 aa9.7□□□□□ -0.86
SFSWAP-209ENST00000540469 COX6CP09669 75 aa9.7□□□□□ -0.86
SFSWAP-209ENST00000540469 PKD1L2Q7Z442 2459 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 IGIPA6NJ69 53 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 ODF3BA8MYP8 253 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 M0QXV9 152 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 OVOL1O14753 267 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 MRPL23Q16540 153 aaKnown RBP9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 SUMO4Q6EEV6 95 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 LENEPQ9Y5L5 61 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 GPHB5Q86YW7 130 aa9.69□□□□□ -0.86
SFSWAP-209ENST00000540469 TRBV7-1A0A0A6YYK4 115 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 TMEM263Q8WUH6 116 aaKnown RBP9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 TIMM17AQ99595 171 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 YAE1D1Q9NRH1 226 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 M0R2P5 195 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 ELANEP08246 267 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 SPXQ9BT56 116 aa9.68□□□□□ -0.86
SFSWAP-209ENST00000540469 RNF223E7ERA6 249 aa9.67□□□□□ -0.86
SFSWAP-209ENST00000540469 TRBV10-2A0A0K0K1G8 114 aa9.67□□□□□ -0.86
SFSWAP-209ENST00000540469 LEPROTO15243 131 aa9.67□□□□□ -0.86
SFSWAP-209ENST00000540469 RNASE3P12724 160 aaKnown RBP9.67□□□□□ -0.86
SFSWAP-209ENST00000540469 ZNF876PQ49A33 203 aa9.67□□□□□ -0.86
SFSWAP-209ENST00000540469 A0A0B4J2C4 111 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 OOSP1A8MZH6 123 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 RPL13AP40429 203 aaKnown RBP9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 MINOS1Q5TGZ0 78 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 Q8N6K4 173 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 CHCHD5Q9BSY4 110 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 MINOS1-NBL1R4GNA1 71 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 A0A0J9YXV3 536 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 TRIAP1O43715 76 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 IGHV3-11P01762 117 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 TMEM219Q86XT9 240 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 CREBBPQ92793 2442 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 P0DMU3 169 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 FAM231AP0DMU4 169 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 FAM231CP0DMU5 169 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 LRBAP50851 2863 aa9.66□□□□□ -0.86
SFSWAP-209ENST00000540469 CENPVL3A0A0U1RRI6 287 aa9.65□□□□□ -0.86
SFSWAP-209ENST00000540469 IGKV3-20P01619 116 aa9.65□□□□□ -0.86
SFSWAP-209ENST00000540469 PRR30Q53SZ7 412 aaPredicted RBP9.65□□□□□ -0.86
SFSWAP-209ENST00000540469 DUX3Q96PT4 197 aa9.65□□□□□ -0.86
SFSWAP-209ENST00000540469 TRAV12-3A0A0B4J271 114 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms