RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 C12orf74Q32Q52 190 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 CLEC19AQ6UXS0 136 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 RNF182Q8N6D2 247 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 ZFAND2AQ8N6M9 145 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 TMEM141Q96I45 108 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 AJUBAQ96IF1 538 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 ODF3Q96PU9 254 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 SCGB3A1Q96QR1 104 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 HIST1H4GQ99525 98 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 KRTAP17-1Q9BYP8 105 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 TMEM160Q9NX00 188 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 TLN2Q9Y4G6 2542 aa4.8□□□□□ -1.64
SYNE1-233ENST00000535896 MTORP42345 2549 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 H3BVH4 76 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 IGHV4-39P01824 125 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 ZFP36P26651 326 aaKnown RBP4.79□□□□□ -1.64
SYNE1-233ENST00000535896 ARL3P36405 182 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 CD300EQ496F6 205 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-233ENST00000535896 Q5PR19 223 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 TIMM17AQ99595 171 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 SPANXB1Q9NS25 103 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-233ENST00000535896 CYSLTR1Q9Y271 337 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 PHLDA3Q9Y5J5 127 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 ACANP16112 2415 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 AGRNO00468 2067 aa4.79□□□□□ -1.64
SYNE1-233ENST00000535896 TEX48A0A1B0GUV7 120 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 M0QXV9 152 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 GAS8-AS1O95177 125 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 GATA1P15976 413 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-233ENST00000535896 S100A4P26447 101 aaKnown RBP4.78□□□□□ -1.64
SYNE1-233ENST00000535896 UBE2D1P51668 147 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 GAGE13Q4V321 117 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 IGFL4Q6B9Z1 124 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 C2orf66Q6UXQ4 117 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 BAALCQ8WXS3 180 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 RASL10AQ92737 203 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 PIMREGQ9BSJ6 248 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 F8P00451 2351 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 HIVEP1P15822 2718 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 ARHGAP32A7KAX9 2087 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 CELSR1Q9NYQ6 3014 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 TRBV20-1A0A075B6N2 111 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 TRBV6-5A0A0K0K1A5 114 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 C11orf86A6NJI1 115 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 KLLNB2CW77 178 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 H3BMG7 143 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 K7EMT4 169 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 LGALS1P09382 135 aaKnown RBP4.78□□□□□ -1.64
SYNE1-233ENST00000535896 RIPPLY3P57055 190 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 LMO4P61968 165 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 RPL24P83731 157 aaKnown RBP4.78□□□□□ -1.64
SYNE1-233ENST00000535896 SCGB2A2Q13296 93 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 C10orf105Q8TEF2 133 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 DLX4Q92988 240 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-233ENST00000535896 KIR2DL4Q99706 377 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 SIGMAR1Q99720 223 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 PRO0461Q9UI25 63 aa4.78□□□□□ -1.64
SYNE1-233ENST00000535896 ZANQ9Y493 2812 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 CSPG4Q6UVK1 2322 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 TRAV26-2A0A0B4J265 109 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 A0A1B0GV72 72 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 TMEM89A2RUT3 159 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 K7ERJ3 54 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 VCYO14598 125 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 HOXA3O43365 443 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 LY6HO94772 140 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 IGHV1-69P01742 117 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 IGHG2P01859 326 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PF4V1P10720 104 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PPIFP30405 207 aaKnown RBP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 ID1P41134 155 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PMVKQ15126 192 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 RHOHQ15669 191 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 NSUN5P1Q3KNT7 163 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 TCTEX1D4Q5JR98 221 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PRR9Q5T870 116 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 GPHB5Q86YW7 130 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 MTURNQ8N3F0 131 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 MAPKAPK5-AS1Q8N8E1 139 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 NAA38Q9BRA0 125 aaKnown RBP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 PRADC1Q9BSG0 188 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 C1QTNF4Q9BXJ3 329 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 EDA2RQ9HAV5 297 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 DAZ1Q9NQZ3 744 aaKnown RBP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 KIF25-AS1Q9Y6Z4 181 aa4.77□□□□□ -1.65
SYNE1-233ENST00000535896 ZNF469Q96JG9 3925 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-233ENST00000535896 MED13LQ71F56 2210 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 WNK2Q9Y3S1 2297 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 IGHV4-30-2A0A087WSY4 118 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 IGHV3-35A0A0C4DH35 117 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 TRBV27A0A0K0K1C4 114 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 GAGE12HA6NDE8 117 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 PRSS29PA6NIE9 313 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 ZNF815PA8K554 130 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 G3V318 75 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 LGALS9O00182 355 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 CD7P09564 240 aa4.76□□□□□ -1.65
SYNE1-233ENST00000535896 RNASE3P12724 160 aaKnown RBP4.76□□□□□ -1.65
SYNE1-233ENST00000535896 CRYBA4P53673 196 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms