RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 IGLC6P0CF74 106 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 S100A4P26447 101 aaKnown RBP3.39□□□□□ -1.87
USH1C-210ENST00000534556 TIRAPP58753 221 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 MEF2BQ02080 365 aaPredicted RBP3.39□□□□□ -1.87
USH1C-210ENST00000534556 GAGE1Q13065 139 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 GAGE4Q13068 117 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 GAGE5Q13069 117 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 GAGE13Q4V321 117 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 CENPWQ5EE01 88 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 PIK3CD-AS1Q5SR53 167 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 PRR27Q6MZM9 219 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 ZFP2Q6ZN57 461 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 SPATA12Q7Z6I5 190 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 MAPKAPK5-AS1Q8N8E1 139 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 LYPD6BQ8NI32 183 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 PCNPQ8WW12 178 aaKnown RBP3.39□□□□□ -1.87
USH1C-210ENST00000534556 TCEAL7Q9BRU2 100 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 MANBALQ9NQG1 85 aa3.39□□□□□ -1.87
USH1C-210ENST00000534556 LRCOL1A6NCL2 159 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 A8MWV9 139 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 S100A9P06702 114 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 CXCL1P09341 107 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 OR5AL1P0C617 328 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 BCL2P10415 239 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 MGST1P10620 155 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 BTF3P20290 206 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 RAB5CP51148 216 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 SSTP61278 116 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 EIF5AP63241 154 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 RHOHQ15669 191 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 TTC32Q5I0X7 151 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 LELP1Q5T871 98 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 FAM74A4Q5TZK3 123 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 NTM-AS1Q6ZSK4 140 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 DAZ4Q86SG3 579 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 NEXN-AS1Q8NBZ9 246 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 ATP6V0E2Q8NHE4 81 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 OCC1Q8TAD7 63 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 GTSF1LQ9H1H1 148 aa3.38□□□□□ -1.87
USH1C-210ENST00000534556 DAZ3Q9NR90 486 aaKnown RBP3.38□□□□□ -1.87
USH1C-210ENST00000534556 A0A087WTM6 91 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IGHV3-38A0A0C4DH36 116 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 C16orf90A8MZG2 172 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IBA57-AS1B1ANH7 110 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 C9JQL5 133 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 TEX46H3BTG2 121 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 CIDEAO60543 219 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IGHV3-30P01768 117 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IGHV3-33P01772 117 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IGHV3-30-3P0DP02 117 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 IGHV3-30-5P0DP03 117 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 MED14OSP0DP75 135 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 FOXA3P55318 350 aaPredicted RBP3.37□□□□□ -1.87
USH1C-210ENST00000534556 KRTAP10-1P60331 282 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 UBE2D3P61077 147 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 UBE2D2P62837 147 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 LINC01556Q5JQF7 62 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 SOHLH1Q5JUK2 328 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 NUDT10Q8NFP7 164 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 NUDT11Q96G61 164 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 TXNDC17Q9BRA2 123 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 PRADC1Q9BSG0 188 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 RNASE7Q9H1E1 156 aaKnown RBP3.37□□□□□ -1.87
USH1C-210ENST00000534556 MED9Q9NWA0 146 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 VAX2Q9UIW0 290 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 PHLDA3Q9Y5J5 127 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 LY96Q9Y6Y9 160 aa3.37□□□□□ -1.87
USH1C-210ENST00000534556 GAS8-AS1O95177 125 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 GNG4P50150 75 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 XGP55808 180 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 SRSF3P84103 164 aaKnown RBP3.36□□□□□ -1.87
USH1C-210ENST00000534556 OR10J3Q5JRS4 329 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 EIF5AL1Q6IS14 154 aaKnown RBP3.36□□□□□ -1.87
USH1C-210ENST00000534556 LYZL1Q6UWQ5 148 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 NIT1Q86X76 327 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 ZFP82Q8N141 532 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 OR2D3Q8NGH3 330 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 OR10G8Q8NGN5 311 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 DEFB104AQ8WTQ1 72 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 GTSF1Q8WW33 167 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 Q9HAA7 133 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 DMBT1Q9UGM3 2413 aaPredicted RBP3.36□□□□□ -1.87
USH1C-210ENST00000534556 FAT3Q8TDW7 4589 aa3.36□□□□□ -1.87
USH1C-210ENST00000534556 LRP1Q07954 4544 aaKnown RBP3.35□□□□□ -1.87
USH1C-210ENST00000534556 TRBV7-3A0A075B6L6 115 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 M0QY20 66 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 RHODO00212 210 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 LECT2O14960 151 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 PDE6DO43924 150 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 SRP19P09132 144 aaKnown RBP3.35□□□□□ -1.87
USH1C-210ENST00000534556 EVI2AP22794 236 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 CTRLP40313 264 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 RAB4BP61018 213 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 HAMPP81172 84 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 TOR2AQ5JU69 321 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 SUMO4Q6EEV6 95 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 SH2D6Q7Z4S9 175 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 FER1L6-AS1Q8NA97 138 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 SYT8Q8NBV8 401 aa3.35□□□□□ -1.87
USH1C-210ENST00000534556 NTN5Q8WTR8 489 aaPredicted RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms