RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SULT1C4O75897 302 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 BPGMP07738 259 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 SCTP09683 121 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 UCHL1P09936 223 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 BCL2P10415 239 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 NFYAP23511 347 aaPredicted RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 PEBP1P30086 187 aaKnown RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 AKR1C3P42330 323 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 POLR2HP52434 150 aaKnown RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 DEFA1P59665 94 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 MAXP61244 160 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 RPL26P61254 145 aaKnown RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 PSPHP78330 225 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 BTG2P78543 158 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 MIAQ16674 131 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 LTC4SQ16873 150 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 TPRXLQ17RH7 258 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 ZNF791Q3KP31 576 aaPredicted RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 BCL2L15Q5TBC7 163 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 Q6ZTI0 123 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 SPATA12Q7Z6I5 190 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 NDUFA11Q86Y39 141 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 PRR15Q8IV56 129 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 EXOC3-AS1Q8N2X6 119 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 ZNF563Q8TA94 476 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 RPS4Y2Q8TD47 263 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 YPEL2Q96QA6 119 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 PFDN5Q99471 154 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 MIEN1Q9BRT3 115 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 TMEM133Q9H2Q1 129 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 SLC39A9Q9NUM3 307 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 CKLFQ9UBR5 152 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 RPL26L1Q9UNX3 145 aaKnown RBP1.13□□□□□ -2.23
CD44-233ENST00000531141 LRP1BQ9NZR2 4599 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 KIAA2026Q5HYC2 2103 aa1.13□□□□□ -2.23
CD44-233ENST00000531141 A0A087X0T9 212 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TRAV5A0A0B4J249 113 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TRAV41A0A0B4J266 112 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 A0A0J9YW62 118 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TRDV1A0A1B0GX56 115 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TMEM189A5PLL7 270 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 GGT3PA6NGU5 568 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 C11orf86A6NJI1 115 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TRAPPC2LH3BP13 241 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 LEPROTO15243 131 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TPST1O60507 370 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TCL1BO95988 128 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 IGHV3-7P01780 117 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TRGC2P03986 189 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 PSMB8P28062 276 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 XCL1P47992 114 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 HINT1P49773 126 aaPredicted RBP1.12□□□□□ -2.23
CD44-233ENST00000531141 CKS1BP61024 79 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 EIF5AP63241 154 aaKnown RBP1.12□□□□□ -2.23
CD44-233ENST00000531141 RELAQ04206 551 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 OR8B8Q15620 311 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 RTL8BQ17RB0 113 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 MORN2Q502X0 79 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 MIR17HGQ75NE6 70 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 IFT20Q8IY31 132 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 DYNAPQ8N1N2 210 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TMEM229BQ8NBD8 167 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 DEFB108BQ8NET1 73 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 NAT14Q8WUY8 206 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 SLAMF6Q96DU3 332 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 TEX37Q96LM6 180 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 SCGB3A1Q96QR1 104 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 SLC25A21Q9BQT8 299 aaPredicted RBP1.12□□□□□ -2.23
CD44-233ENST00000531141 COPZ2Q9P299 210 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 MED31Q9Y3C7 131 aa1.12□□□□□ -2.23
CD44-233ENST00000531141 CHCHD2Q9Y6H1 151 aaPredicted RBP1.12□□□□□ -2.23
CD44-233ENST00000531141 DNAH6Q9C0G6 4158 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 TRGV10A0A0A0MS01 117 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 IGKV1D-43A0A0B4J1Z2 117 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 RFPL4AA6NLU0 287 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 RFPL4AL1F8VTS6 287 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 BUB1B-PAK6H3BSN5 160 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 J3QQQ9 107 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 K7EP13 123 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 TAX1BP3O14907 124 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 CREBL2O60519 120 aaPredicted RBP1.11□□□□□ -2.23
CD44-233ENST00000531141 CST8O60676 142 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 SMIM24O75264 130 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 PIRTP0C851 137 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 MPC1LP0DKB6 136 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 COX4I1P13073 169 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 EVI2AP22794 236 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 S100A1P23297 94 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 RPS3P23396 243 aaKnown RBP eCLIP1.11□□□□□ -2.23
CD44-233ENST00000531141 NFYBP25208 207 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 CMPK1P30085 196 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 ASIPP42127 132 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 ZNF80P51504 273 aaPredicted RBP1.11□□□□□ -2.23
CD44-233ENST00000531141 UBE2BP63146 152 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 LINC01554Q52M75 96 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 PABPC1L2AQ5JQF8 200 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 C1orf140Q5VVS0 124 aa1.11□□□□□ -2.23
CD44-233ENST00000531141 ZNF705AQ6ZN79 300 aaPredicted RBP1.11□□□□□ -2.23
CD44-233ENST00000531141 Q6ZRN7 208 aaPredicted RBP1.11□□□□□ -2.23
CD44-233ENST00000531141 OR8I2Q8N0Y5 310 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms