RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FAM162BQ5T6X4 162 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 ZFP2Q6ZN57 461 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 TMUB2Q71RG4 321 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 TM2D2Q9BX73 214 aa7.54□□□□□ -1.2
VPS28-214ENST00000531032 A8MWV9 139 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 H3BVH4 76 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 SH2D1AO60880 128 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 H2AFB1P0C5Y9 115 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 WFDC2Q14508 124 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 EIF5AL1Q6IS14 154 aaKnown RBP7.53□□□□□ -1.2
VPS28-214ENST00000531032 Q6ZSA8 131 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 Q8N3U1 123 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 SYT8Q8NBV8 401 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 ZC2HC1AQ96GY0 325 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 PARLQ9H300 379 aa7.53□□□□□ -1.2
VPS28-214ENST00000531032 IGKV3D-20A0A0C4DH25 116 aa7.52□□□□□ -1.21
VPS28-214ENST00000531032 TEX46H3BTG2 121 aa7.52□□□□□ -1.21
VPS28-214ENST00000531032 NKX2-5P52952 324 aaPredicted RBP7.52□□□□□ -1.21
VPS28-214ENST00000531032 UFSP1Q6NVU6 142 aa7.52□□□□□ -1.21
VPS28-214ENST00000531032 C9orf62Q8N4C0 152 aa7.52□□□□□ -1.21
VPS28-214ENST00000531032 MBD3L1Q8WWY6 194 aa7.52□□□□□ -1.21
VPS28-214ENST00000531032 TMSB15BA0A087X1C1 80 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 TRAV8-3A0A0A6YYJ7 113 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 SCO2A0A1W2PP80 73 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 GAGE12JA6NER3 117 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 LTAP01374 205 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 S100A9P06702 114 aaKnown RBP7.51□□□□□ -1.21
VPS28-214ENST00000531032 GAGE1Q13065 139 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 GAGE4Q13068 117 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 GAGE5Q13069 117 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 GAGE13Q4V321 117 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 IL36BQ9NZH7 164 aa7.51□□□□□ -1.21
VPS28-214ENST00000531032 A0A087WWC5 75 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 TRBV6-1A0A0K0K1D8 114 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 GRIFINA4D1Z8 144 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 RAB5CP51148 216 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 TOR2AQ5JU69 321 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 DAZ4Q86SG3 579 aaKnown RBP7.5□□□□□ -1.21
VPS28-214ENST00000531032 MANBALQ9NQG1 85 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 DAZ3Q9NR90 486 aaKnown RBP7.5□□□□□ -1.21
VPS28-214ENST00000531032 GNG13Q9P2W3 67 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 Q9UF83 564 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 PHLDA3Q9Y5J5 127 aa7.5□□□□□ -1.21
VPS28-214ENST00000531032 KRBOX1C9JBD0 128 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 M0R381 172 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 RHODO00212 210 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 ARMS2P0C7Q2 107 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 LINC01559Q495D7 138 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 DNLZQ5SXM8 178 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 FAM74A4Q5TZK3 123 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 BAGE2Q86Y30 109 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 C14orf178Q8N769 122 aaPredicted RBP7.49□□□□□ -1.21
VPS28-214ENST00000531032 SAMD10Q9BYL1 202 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 JPT2Q9H910 190 aa7.49□□□□□ -1.21
VPS28-214ENST00000531032 DNAH8Q96JB1 4490 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 LECT2O14960 151 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 IFNA1P01562 189 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 PLA2G1BP04054 148 aaKnown RBP7.48□□□□□ -1.21
VPS28-214ENST00000531032 CRIP1P50238 77 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 ZNF674Q2M3X9 581 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 DMRTA1Q5VZB9 504 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 PRR27Q6MZM9 219 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 COX8CQ7Z4L0 72 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 ZFP82Q8N141 532 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 COX11Q9Y6N1 276 aa7.48□□□□□ -1.21
VPS28-214ENST00000531032 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.47□□□□□ -1.21
VPS28-214ENST00000531032 J3QL48 77 aa7.47□□□□□ -1.21
VPS28-214ENST00000531032 SLC51BQ86UW2 128 aa7.47□□□□□ -1.21
VPS28-214ENST00000531032 NIT1Q86X76 327 aa7.47□□□□□ -1.21
VPS28-214ENST00000531032 LINC00528Q8N1L1 170 aa7.47□□□□□ -1.21
VPS28-214ENST00000531032 BAALCQ8WXS3 180 aa7.47□□□□□ -1.21
VPS28-214ENST00000531032 A0A087WWL8 130 aa7.46□□□□□ -1.22
VPS28-214ENST00000531032 SULT1A2P50226 295 aa7.46□□□□□ -1.22
VPS28-214ENST00000531032 RMI2Q96E14 147 aa7.46□□□□□ -1.22
VPS28-214ENST00000531032 URGCP-MRPS24S4R325 110 aa7.46□□□□□ -1.22
VPS28-214ENST00000531032 KRTAP29-1A8MX34 341 aaPredicted RBP7.45□□□□□ -1.22
VPS28-214ENST00000531032 RPL35P42766 123 aaKnown RBP7.45□□□□□ -1.22
VPS28-214ENST00000531032 RPL19P84098 196 aaKnown RBP7.45□□□□□ -1.22
VPS28-214ENST00000531032 Q8N976 141 aa7.45□□□□□ -1.22
VPS28-214ENST00000531032 SFRP2Q96HF1 295 aa7.45□□□□□ -1.22
VPS28-214ENST00000531032 DNAJC30Q96LL9 226 aa7.45□□□□□ -1.22
VPS28-214ENST00000531032 CHCHD7Q9BUK0 85 aa7.45□□□□□ -1.22
VPS28-214ENST00000531032 TRAV1-1A0A0B4J248 108 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 TRBV10-1A0A0K0K1A3 114 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 CXCL1P09341 107 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 CCL20P78556 96 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 ZNF56Q15929 161 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 LINC01620Q4KN68 170 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 CENPWQ5EE01 88 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 SPANXN1Q5VSR9 72 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 ATRAIDQ6UW56 229 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 SCXQ7RTU7 201 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 DEFB104AQ8WTQ1 72 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 C11orf52Q96A22 123 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 DAZAP1Q96EP5 407 aaKnown RBP7.44□□□□□ -1.22
VPS28-214ENST00000531032 KLK12Q9UKR0 248 aa7.44□□□□□ -1.22
VPS28-214ENST00000531032 IGKV2D-24A0A075B6R9 120 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 RBFOX3A6NFN3 312 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 PDE6DO43924 150 aa7.43□□□□□ -1.22
VPS28-214ENST00000531032 GNG4P50150 75 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms