RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SYS1-DBNDD2H3BUS1 97 aa13.84□□□□□ -0.19
VPS28-207ENST00000526977 NRACQ8N912 160 aa13.84□□□□□ -0.19
VPS28-207ENST00000526977 LINC01546A6NGU7 62 aa13.83□□□□□ -0.2
VPS28-207ENST00000526977 NXPH4O95158 308 aa13.83□□□□□ -0.2
VPS28-207ENST00000526977 ATOH7Q8N100 152 aa13.83□□□□□ -0.2
VPS28-207ENST00000526977 C14orf178Q8N769 122 aaPredicted RBP13.83□□□□□ -0.2
VPS28-207ENST00000526977 ZMAT5Q9UDW3 170 aaKnown RBP13.83□□□□□ -0.2
VPS28-207ENST00000526977 FXYD7P58549 80 aa13.83□□□□□ -0.2
VPS28-207ENST00000526977 TRPT1Q86TN4 253 aaKnown RBP13.83□□□□□ -0.2
VPS28-207ENST00000526977 IGHV1OR15-1A0A075B7D0 117 aa13.82□□□□□ -0.2
VPS28-207ENST00000526977 IGHV3-16A0A0C4DH30 117 aa13.82□□□□□ -0.2
VPS28-207ENST00000526977 NUTF2P61970 127 aaKnown RBP13.82□□□□□ -0.2
VPS28-207ENST00000526977 MRAP2Q96G30 205 aa13.82□□□□□ -0.2
VPS28-207ENST00000526977 MAP1LC3CQ9BXW4 147 aa13.82□□□□□ -0.2
VPS28-207ENST00000526977 DPH3P1Q9H4G8 78 aa13.82□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1BA6NDE4 496 aaKnown RBP13.81□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1EA6NEQ0 496 aaKnown RBP13.81□□□□□ -0.2
VPS28-207ENST00000526977 PRSS47A8MTI9 375 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1DP0C7P1 496 aaKnown RBP13.81□□□□□ -0.2
VPS28-207ENST00000526977 SPATA45Q537H7 98 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 OXLD1Q5BKU9 147 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 MIEN1Q9BRT3 115 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 NXT2Q9NPJ8 142 aaKnown RBP13.81□□□□□ -0.2
VPS28-207ENST00000526977 MDFICQ9P1T7 246 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 MAJINQ3KP22 176 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 Q8N1Y9 231 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 DEFB125Q8N687 156 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 MUC4Q99102 2169 aa13.81□□□□□ -0.2
VPS28-207ENST00000526977 IGLV2-18A0A075B6J9 118 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 C9orf85Q96MD7 179 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1A1P0DJD3 496 aaKnown RBP13.8□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1CP0DJD4 496 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 RBMY1FQ15415 496 aaKnown RBP13.8□□□□□ -0.2
VPS28-207ENST00000526977 Q8N8P6 123 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 WFDC10AQ9H1F0 79 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 KIF25-AS1Q9Y6Z4 181 aa13.8□□□□□ -0.2
VPS28-207ENST00000526977 HBDP02042 147 aa13.79□□□□□ -0.2
VPS28-207ENST00000526977 PET117Q6UWS5 81 aa13.79□□□□□ -0.2
VPS28-207ENST00000526977 AP1S3Q96PC3 154 aa13.79□□□□□ -0.2
VPS28-207ENST00000526977 LINC00315P59091 139 aa13.78□□□□□ -0.2
VPS28-207ENST00000526977 POM121L12Q8N7R1 296 aa13.78□□□□□ -0.2
VPS28-207ENST00000526977 TRAV9-2A0A087WT02 112 aa13.78□□□□□ -0.2
VPS28-207ENST00000526977 EGFEM1PQ0D2K5 195 aa13.78□□□□□ -0.2
VPS28-207ENST00000526977 JPT2Q9H910 190 aa13.78□□□□□ -0.2
VPS28-207ENST00000526977 ZNF705AQ6ZN79 300 aaPredicted RBP13.77□□□□□ -0.21
VPS28-207ENST00000526977 RASL10AQ92737 203 aa13.77□□□□□ -0.21
VPS28-207ENST00000526977 MGPP08493 103 aa13.76□□□□□ -0.21
VPS28-207ENST00000526977 MORN3Q6PF18 240 aaPredicted RBP13.76□□□□□ -0.21
VPS28-207ENST00000526977 ANK2Q01484 3957 aa13.76□□□□□ -0.21
VPS28-207ENST00000526977 IGLC3P0DOY3 106 aa13.76□□□□□ -0.21
VPS28-207ENST00000526977 FCER1GP30273 86 aa13.76□□□□□ -0.21
VPS28-207ENST00000526977 C20orf202A1L168 122 aa13.75□□□□□ -0.21
VPS28-207ENST00000526977 H0Y8G0 127 aa13.75□□□□□ -0.21
VPS28-207ENST00000526977 LINC01545Q5VT33 79 aa13.74□□□□□ -0.21
VPS28-207ENST00000526977 RPL39LQ96EH5 51 aaKnown RBP13.74□□□□□ -0.21
VPS28-207ENST00000526977 INSP01308 110 aa13.74□□□□□ -0.21
VPS28-207ENST00000526977 SMIM17P0DL12 118 aa13.74□□□□□ -0.21
VPS28-207ENST00000526977 C1QTNF4Q9BXJ3 329 aa13.74□□□□□ -0.21
VPS28-207ENST00000526977 TRGV11A0A075B6L2 103 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 CBY3A6NI87 242 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 RPL35AP18077 110 aaKnown RBP13.73□□□□□ -0.21
VPS28-207ENST00000526977 C20orf78Q9BR46 151 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 XCL2Q9UBD3 114 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 A0A087WWL8 130 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 SYT8Q8NBV8 401 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 SNHG12Q9BXW3 62 aa13.73□□□□□ -0.21
VPS28-207ENST00000526977 EREGO14944 169 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 TCAPO15273 167 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 HTN1P15515 57 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 KRTAP10-11P60412 298 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 SUMO2P61956 95 aaKnown RBP13.72□□□□□ -0.21
VPS28-207ENST00000526977 SAMD5Q5TGI4 173 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 IFI27L1Q96BM0 104 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 SMIM2Q9BVW6 85 aa13.72□□□□□ -0.21
VPS28-207ENST00000526977 G3V4G9 280 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 LAGE3Q14657 143 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 KRTAP21-3Q3LHN1 58 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 PMCHL2Q9BQD1 86 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 UQCR10Q9UDW1 63 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 PKD1L1Q8TDX9 2849 aa13.71□□□□□ -0.21
VPS28-207ENST00000526977 PRM2P04554 102 aa13.71□□□□□ -0.22
VPS28-207ENST00000526977 LBHQ53QV2 105 aaPredicted RBP13.71□□□□□ -0.22
VPS28-207ENST00000526977 C2orf88Q9BSF0 95 aa13.71□□□□□ -0.22
VPS28-207ENST00000526977 CSTL1Q9H114 145 aa13.71□□□□□ -0.22
VPS28-207ENST00000526977 PPP1R17O96001 155 aa13.7□□□□□ -0.22
VPS28-207ENST00000526977 hDV102S1A0JD36 115 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 CRYGDP07320 174 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 GIG44P09565 113 aaPredicted RBP13.69□□□□□ -0.22
VPS28-207ENST00000526977 ZNF876PQ49A33 203 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 C18orf15Q96N68 181 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 M0R143 59 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 SUMO4Q6EEV6 95 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 LINC01587Q99440 93 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 LINC00467Q9BRT7 94 aa13.69□□□□□ -0.22
VPS28-207ENST00000526977 KIR2DL5BQ8NHK3 375 aa13.68□□□□□ -0.22
VPS28-207ENST00000526977 TMEM208Q9BTX3 173 aa13.68□□□□□ -0.22
VPS28-207ENST00000526977 F5H697 171 aa13.68□□□□□ -0.22
VPS28-207ENST00000526977 LGALS9BQ3B8N2 356 aa13.68□□□□□ -0.22
VPS28-207ENST00000526977 LGALS9CQ6DKI2 356 aa13.68□□□□□ -0.22
VPS28-207ENST00000526977 FAM74A4Q5TZK3 123 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms