RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 SAMD10Q9BYL1 202 aa14.47□□□□□ -0.09
CD44-222ENST00000526025 DNAH1Q9P2D7 4330 aa14.47□□□□□ -0.09
CD44-222ENST00000526025 LCE6AA0A183 80 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 PPP1R2P9O14990 202 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 P0DMU3 169 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 FAM231AP0DMU4 169 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 FAM231CP0DMU5 169 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 ADCYAP1P18509 176 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 RHOHQ15669 191 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 LINC00476Q8WZB0 136 aa14.46□□□□□ -0.09
CD44-222ENST00000526025 MUC21A0A0G2JKD1 596 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 MUC21A0A140T8X8 626 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 F8W036 122 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 NUDT3O95989 172 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 TRGC1P0CF51 173 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 SLC25A29Q8N8R3 303 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 ICOSQ9Y6W8 199 aa14.45□□□□□ -0.1
CD44-222ENST00000526025 KMT2CQ8NEZ4 4911 aaKnown RBP14.45□□□□□ -0.1
CD44-222ENST00000526025 IGHV3-73A0A0B4J1V6 119 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 HIGD1CA8MV81 97 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 NTF3P20783 257 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 MRPL23Q16540 153 aaKnown RBP14.44□□□□□ -0.1
CD44-222ENST00000526025 C10orf91Q5T1B1 145 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 PRADC1Q9BSG0 188 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 KIF25-AS1Q9Y6Z4 181 aa14.44□□□□□ -0.1
CD44-222ENST00000526025 A0A087WWL8 130 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 A0A096LPF7 62 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 SMIM27A0A1W2PRY6 76 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 RNF212Q495C1 297 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 FAM74A4Q5TZK3 123 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 BORCS7Q96B45 105 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 ANAPC16Q96DE5 110 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 NAT8BQ9UHF3 227 aa14.43□□□□□ -0.1
CD44-222ENST00000526025 K7EQD1 137 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 MT-ND4LP03901 98 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 SMIM17P0DL12 118 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 RAB4BP61018 213 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 SH2D6Q7Z4S9 175 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 C14orf178Q8N769 122 aaPredicted RBP14.42□□□□□ -0.1
CD44-222ENST00000526025 PGLYRP4Q96LB8 373 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 MSRB1Q9NZV6 116 aa14.42□□□□□ -0.1
CD44-222ENST00000526025 VPS13DQ5THJ4 4388 aa14.41□□□□□ -0.1
CD44-222ENST00000526025 GYPEP15421 78 aa14.41□□□□□ -0.1
CD44-222ENST00000526025 FAM3BP58499 235 aaPredicted RBP14.41□□□□□ -0.1
CD44-222ENST00000526025 TWIST1Q15672 202 aa14.41□□□□□ -0.1
CD44-222ENST00000526025 Q6ZSN1 163 aa14.41□□□□□ -0.1
CD44-222ENST00000526025 CARHSP1Q9Y2V2 147 aaKnown RBP14.41□□□□□ -0.1
CD44-222ENST00000526025 TRBV10-1A0A0K0K1A3 114 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 A0A1B0GUT8 65 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 LINC00315P59091 139 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 NUP35Q8NFH5 326 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 DPH3P1Q9H4G8 78 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 SACSQ9NZJ4 4579 aa14.4□□□□□ -0.1
CD44-222ENST00000526025 SRIP30626 198 aa14.39□□□□□ -0.11
CD44-222ENST00000526025 SSTP61278 116 aa14.39□□□□□ -0.11
CD44-222ENST00000526025 NEGR1Q7Z3B1 354 aa14.39□□□□□ -0.11
CD44-222ENST00000526025 EVI2AP22794 236 aa14.38□□□□□ -0.11
CD44-222ENST00000526025 CCL18P55774 89 aa14.38□□□□□ -0.11
CD44-222ENST00000526025 SMIM15Q7Z3B0 74 aa14.38□□□□□ -0.11
CD44-222ENST00000526025 LY6G6CO95867 125 aa14.37□□□□□ -0.11
CD44-222ENST00000526025 LINC00694P0DN24 101 aa14.37□□□□□ -0.11
CD44-222ENST00000526025 RIGQ13278 110 aa14.37□□□□□ -0.11
CD44-222ENST00000526025 ZNF56Q15929 161 aa14.37□□□□□ -0.11
CD44-222ENST00000526025 A0A1B0GW15 77 aa14.36□□□□□ -0.11
CD44-222ENST00000526025 TIRAPP58753 221 aa14.36□□□□□ -0.11
CD44-222ENST00000526025 DNAH6Q9C0G6 4158 aa14.36□□□□□ -0.11
CD44-222ENST00000526025 LOC100131303A0A0U1RQF7 123 aa14.35□□□□□ -0.11
CD44-222ENST00000526025 UBE2DNLQ8IWF7 75 aa14.35□□□□□ -0.11
CD44-222ENST00000526025 CTDSP1Q9GZU7 261 aa14.35□□□□□ -0.11
CD44-222ENST00000526025 F5H697 171 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 H7C1H1 209 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 ESRGQ1W209 222 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 FRZBQ92765 325 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 IMMP2LQ96T52 175 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 UPK3BQ9BT76 320 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 TMEM191AQ9H0A3 160 aa14.34□□□□□ -0.11
CD44-222ENST00000526025 MGPP08493 103 aa14.33□□□□□ -0.12
CD44-222ENST00000526025 TMEM242Q9NWH2 141 aa14.33□□□□□ -0.12
CD44-222ENST00000526025 MRPS16Q9Y3D3 137 aaKnown RBP14.33□□□□□ -0.12
CD44-222ENST00000526025 LINC00588Q9Y4M8 146 aa14.33□□□□□ -0.12
CD44-222ENST00000526025 RPL36AP83881 106 aaKnown RBP14.32□□□□□ -0.12
CD44-222ENST00000526025 RHEBQ15382 184 aa14.32□□□□□ -0.12
CD44-222ENST00000526025 NDUFA5Q16718 116 aa14.32□□□□□ -0.12
CD44-222ENST00000526025 LYPD5Q6UWN5 251 aa14.32□□□□□ -0.12
CD44-222ENST00000526025 ATP5L2Q7Z4Y8 100 aa14.32□□□□□ -0.12
CD44-222ENST00000526025 RPL36ALQ969Q0 106 aaKnown RBP14.32□□□□□ -0.12
CD44-222ENST00000526025 RYR2Q92736 4967 aa14.32□□□□□ -0.12
CD44-222ENST00000526025 TRBV7-3A0A075B6L6 115 aa14.31□□□□□ -0.12
CD44-222ENST00000526025 M0QY20 66 aa14.31□□□□□ -0.12
CD44-222ENST00000526025 S100A8P05109 93 aa14.31□□□□□ -0.12
CD44-222ENST00000526025 SUMO4Q6EEV6 95 aa14.31□□□□□ -0.12
CD44-222ENST00000526025 A0A087WWC5 75 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 GAGE12JA6NER3 117 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 GAGE1Q13065 139 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 GAGE4Q13068 117 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 GAGE5Q13069 117 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 GAGE13Q4V321 117 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 NEXN-AS1Q8NBZ9 246 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 CLRN3Q8NCR9 226 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 ATP6V0E2Q8NHE4 81 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms