RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 FAM231CP0DMU5 169 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 RNASE3P12724 160 aaKnown RBP5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 IFITM2Q01629 132 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 WDR73Q6P4I2 378 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 NUDT10Q8NFP7 164 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 OR10G8Q8NGN5 311 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 OCC1Q8TAD7 63 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 TSKUQ8WUA8 353 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 ISOC2Q96AB3 205 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 NUDT11Q96G61 164 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 SCRT2Q9NQ03 307 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 C11orf21Q9P2W6 132 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 ICOSQ9Y6W8 199 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 VPS13DQ5THJ4 4388 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 A0A1B0GW15 77 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 LINC00862A6NCI5 91 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 PGPEP1LA6NFU8 196 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 F8W036 122 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 K7EN84 100 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 RS1O15537 224 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 NXPH4O95158 308 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 CTRLP40313 264 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 FAM3BP58499 235 aaPredicted RBP5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 RPL23P62829 140 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 LCE1DQ5T752 114 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 TMEM88Q6PEY1 159 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 Q6ZQT7 251 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 UBE2DNLQ8IWF7 75 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 ANAPC16Q96DE5 110 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 SEC11CQ9BY50 192 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 RNASE7Q9H1E1 156 aaKnown RBP5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 NAT8BQ9UHF3 227 aa5.48□□□□□ -1.53
LIMCH1-222ENST00000515847 TRBV6-4A0A1B0GX49 114 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 TMEM218A2RU14 115 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 IGHV3-53P01767 116 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 IGLC6P0CF74 106 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 SRIP30626 198 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 CCL18P55774 89 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 MRPL23Q16540 153 aaKnown RBP5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 CFAP126Q5VTH2 177 aa5.47□□□□□ -1.53
LIMCH1-222ENST00000515847 DNAH6Q9C0G6 4158 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 TRAV26-1A0A087WT03 109 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 TRBV10-1A0A0K0K1A3 114 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 K7EQD1 137 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 NUDT3O95989 172 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 RIGQ13278 110 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 RHEBQ15382 184 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 ZNF56Q15929 161 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 FAM74A4Q5TZK3 123 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 KCNIP4Q6PIL6 250 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 OR10AG1Q8NH19 301 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 BTF3L4Q96K17 158 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 CNFNQ9BYD5 112 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 CTDSP1Q9GZU7 261 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 DPH3P1Q9H4G8 78 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 HHLA3Q9XRX5 114 aa5.46□□□□□ -1.54
LIMCH1-222ENST00000515847 A0A1B0GUT8 65 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 HIGD1CA8MV81 97 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 C9JQL5 133 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 GATA1P15976 413 aaPredicted RBP5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 S100PP25815 95 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 CRYBA4P53673 196 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 FOXA3P55318 350 aaPredicted RBP5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 RAB4BP61018 213 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 RPL36AP83881 106 aaKnown RBP5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 SRSF3P84103 164 aaKnown RBP5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 TWIST1Q15672 202 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 RNF212Q495C1 297 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 LGALS9CQ6DKI2 356 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 LYZL1Q6UWQ5 148 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 ATP5L2Q7Z4Y8 100 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 FRZBQ92765 325 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 RPL36ALQ969Q0 106 aaKnown RBP5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 ZNF479Q96JC4 524 aa5.45□□□□□ -1.54
LIMCH1-222ENST00000515847 A0A0J9YY99 117 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 F5H697 171 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 SNAPINO95295 136 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 PPP1R17O96001 155 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 PKIAP61925 76 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 TMEM97Q5BJF2 176 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 NEGR1Q7Z3B1 354 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 SVBPQ8N300 66 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 KRTAP4-7Q9BYR0 210 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 V9GYV3 84 aa5.44□□□□□ -1.54
LIMCH1-222ENST00000515847 RYR2Q92736 4967 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 TRAV9-1A0A075B6T8 112 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 A0A087WWC5 75 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 MGPP08493 103 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 GZMBP10144 247 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 GYPEP15421 78 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 HOXA5P20719 270 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 TIRAPP58753 221 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 FHL2Q14192 279 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 TTC32Q5I0X7 151 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 LINC00476Q8WZB0 136 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 PGLYRP4Q96LB8 373 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 DNAJC30Q96LL9 226 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 IMMP2LQ96T52 175 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 APLNQ9ULZ1 77 aa5.43□□□□□ -1.54
LIMCH1-222ENST00000515847 CARHSP1Q9Y2V2 147 aaKnown RBP5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms